Co-expression analysis

Gene ID Contig22799_at
Gene name
Homology with ArabidopsisSimilar to At4g32551: LUG (LEUNIG) (HF=1e+0)
Module size 6 genes
NF 0.49
%ile 69.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6784.70.95Contig22799_atContig22799--1e+0At4g32551LUG (LEUNIG)O.I.H.G.S.X.
0.7388.70.95Contig21692_atContig21692--3e+0At2g35970harpin-induced family protein / HIN1 family protein / harpin-responsive family proteinO.I.H.G.S.X.
0.7388.70.96Contig8795_atContig8795--6e-1At2g26500cytochrome b6f complex subunit (petM), putativeO.I.H.G.S.X.
0.4356.40.96Contig23686_atContig23686--4e+0At2g10014unknown proteinO.I.H.G.S.X.
0.2935.50.95Contig17421_atContig17421--4e+0At1g45248-O.I.H.G.S.X.
0.2528.90.95HU11L10u_s_atHU11L10u--2e+0At1g59865unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
29.499.9GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.097.9GSM238414Endosperm 8DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.297.4GSM419982Seed_Rep2GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
5.297.4GSM440976Control seed_Rep2GSE17669Gene expression in the barley spike during drought stressLink to GEO
4.396.4GSM372962genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep1GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
4.296.3GSM382237Root_Control3GSE15295Mercury toxicity in barley rootsLink to GEO
3.895.7GSM440960Stressed lemma_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO
3.795.5GSM261033Dicktoo-chilling-rep1GSE10329Low temperature stress in cv. DicktooLink to GEO
3.695.3GSM382233Root_Hg2GSE15295Mercury toxicity in barley rootsLink to GEO
3.695.3GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At4g32551, orthologous to the query gene, Contig22799_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
0.7486.1At4g32551829390LUG (LEUNIG)LEUNIG regulates floral organ identity,gynoecium and ovule development. Negatively regulates AGAMOUS . Encodes a glutamine-rich protein with seven WD repeats similar to transcriptional corepressors.O.I.H.G.S.X.
0.7486.1At1g80930844433MIF4G domain-containing protein / MA3 domain-containing proteinF:protein binding, RNA binding, binding;P:translation, RNA metabolic process;C:cytosol, nucleus;MOFBPVAO.I.H.G.S.X.
0.6781.6At4g17330827445ATG2484-1gene of unknown function expressed in seedlings, flower buds and stemsO.I.H.G.S.X.
0.6781.6At5g51300835204splicing factor-relatedF:RNA binding, nucleotide binding, zinc ion binding, nucleic acid binding;P:RNA splicing;C:unknown;MFPOBVAO.I.H.G.S.X.
0.6680.1At2g36720818244PHD finger transcription factor, putativeF:protein binding, DNA binding, zinc ion binding;P:regulation of transcription, DNA-dependent;C:nucleus;MPFOO.I.H.G.S.X.
0.5974.7At1g26170839158binding / protein transporterF:protein transporter activity, binding;P:intracellular protein transport, protein import into nucleus, docking;C:nucleus, nuclear pore, cytoplasm;MFPOO.I.H.G.S.X.
0.5873.8At1g27595839651-F:unknown;P:unknown;C:unknown;OMFPBO.I.H.G.S.X.
0.5773.8At4g32620829397nucleic acid bindingF:nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;OPMFBO.I.H.G.S.X.
0.5570.6At4g39680830123SAP domain-containing proteinF:DNA binding, nucleic acid binding;P:biological_process unknown;C:cytosol, nucleus, chloroplast;MPOFBVAO.I.H.G.S.X.
0.5469.5At5g15680831422bindingF:binding;P:biological_process unknown;C:plasma membrane, membrane;MFPOO.I.H.G.S.X.
0.5469.5At2g38440818425SCAR2 (SCAR HOMOLOG 2)Encodes a subunit of the WAVE complex. The WAVE complex is required for activation of ARP2/3 complex which functions in actin microfilament nucleation and branching. Mutations cause defects in both the actin and microtubule cytoskeletons that result in aberrant epidermal cell expansion. itb1 mutants showed irregularities in trichome branch positioning and expansion. The SHD domain of this protein binds to BRK1 and overexpression of the SHD domain results in a dominant negative phenotype.O.I.H.G.S.X.
0.5368.6At2g05230815071DNAJ heat shock N-terminal domain-containing proteinF:heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMPFAVO.I.H.G.S.X.
0.5267.4At3g26560822264ATP-dependent RNA helicase, putativeF:in 6 functions;P:unknown;C:cytosol, mitochondrion;MOBFPVAO.I.H.G.S.X.
0.5267.4At1g79730844312ELF7 (EARLY FLOWERING 7)Encodes a PAF1 homolog that is involved in the control of flowering time by elevating FLC expression to a level that creates the vernalization-responsive, winter-annual habit. Yeast PAF1 is a component of a five-member complex that associates with RNA pol II and is thought to regulate gene expression by recruiting SET1 (a histone 3 Lys 4 [H3-K4] methyl transferase) to the initially transcribed [5'] regions of target chromatin. Mutants display reduced H3-K4 methylation in both FLC and FLM chromatin.O.I.H.G.S.X.
0.5166.3At1g50200841442ALATS (ALANYL-TRNA SYNTHETASE)F:alanine-tRNA ligase activity, ligase activity, forming aminoacyl-tRNA and related compounds, nucleotide binding, nucleic acid binding, ATP binding;P:alanyl-tRNA aminoacylation, response to cadmium ion;C:mitochondrion, chloroplast;OBMAFPO.I.H.G.S.X.
0.5166.3At5g48120834864bindingF:binding;P:unknown;C:cellular_component unknown;MFOPO.I.H.G.S.X.
0.4963.5At1g02080839244transcriptional regulator-relatedF:transcription regulator activity;P:unknown;C:membrane;MOFBPO.I.H.G.S.X.
0.4862.5At1g20960838690emb1507 (embryo defective 1507)F:in 6 functions;P:embryonic development ending in seed dormancy;C:nucleolus, membrane;OBMFAPVO.I.H.G.S.X.
0.4862.5At4g34430829594CHB3Member of a small family of SWI3-like genes in Arabidopsis. Referred to as CHB4 in Zhou et al. (2002).O.I.H.G.S.X.
0.4862.5At2g25760817118protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MBOPFVAO.I.H.G.S.X.
0.4761.2At5g38880833879unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAO.I.H.G.S.X.
0.4761.2At2g16940816197RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:mRNA processing;C:nucleus;MOFPBVAO.I.H.G.S.X.
0.4761.2At5g58100835922unknown proteinF:unknown;P:pollen exine formation;C:unknown;POABO.I.H.G.S.X.
0.4761.2At2g46560819268transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:unknown;C:CUL4 RING ubiquitin ligase complex;BFMOPO.I.H.G.S.X.
0.4659.8At1g09730837501Ulp1 protease family proteinF:cysteine-type peptidase activity;P:proteolysis;C:cellular_component unknown;MOFPBVAO.I.H.G.S.X.
0.4558.3At3g15120820743AAA-type ATPase family proteinF:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:unknown;MOBFPAVO.I.H.G.S.X.
0.4253.9At5g51340835208unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBO.I.H.G.S.X.
0.4152.4At5g64270836548splicing factor, putativeF:binding;P:mRNA processing;C:chloroplast;MFOBPAVO.I.H.G.S.X.
0.4152.4At4g00830827998RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MOFPBVAO.I.H.G.S.X.
0.4152.4At5g06120830499Ran-binding protein, putativeF:protein transporter activity, binding;P:intracellular protein transport, protein import into nucleus, docking;C:nucleus, nuclear pore, cytoplasm;MOPO.I.H.G.S.X.
0.4050.8At1g12930837851importin-relatedF:binding;P:biological_process unknown;C:cellular_component unknown;MFPOO.I.H.G.S.X.
0.3948.4At4g05420825890DDB1A (DAMAGED DNA BINDING PROTEIN 1A)Structurally similar to damaged DNA binding proteins.DDB1a is part of a 350 KDa nuclear localized DET1 protein complex. This complex may physically interact with histone tails and while bound to chromatin- repress transcription of genes involved in photomorphogenesis.O.I.H.G.S.X.
0.3846.7At1g55325841978-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MBPOFO.I.H.G.S.X.
0.3846.7At5g27970832867bindingF:binding;P:biological_process unknown;C:cellular_component unknown;MFOPBO.I.H.G.S.X.
0.3745.0At4g30890829213UBP24 (UBIQUITIN-SPECIFIC PROTEASE 24)Encodes a ubiquitin-specific protease.O.I.H.G.S.X.
0.3745.0At3g22170821781FHY3 (FAR-RED ELONGATED HYPOCOTYLS 3)A component of the PHYA signaling network, mediates the FR-HIR response to far-red light in concert with FAR1.O.I.H.G.S.X.
0.3745.0At3g13290820529VCR (VARICOSE-RELATED)F:nucleotide binding;P:unknown;C:cellular_component unknown;MBOFPAO.I.H.G.S.X.
0.3541.6At1g54610841903protein kinase family proteinF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:plasma membrane;MPOFBVAO.I.H.G.S.X.
0.2930.3At3g13670820572protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MBOPFVAO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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