Co-expression analysis

Gene ID	Contig22727_at
Gene name
Homology with Arabidopsis	Similar to At4g38630: RPN10 (REGULATORY PARTICLE NON-ATPASE 10) (HF=2e+0)
Module size	6 genes
NF	0.70
%ile	91.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	80.3	0.72	Contig22727_at	Contig22727	-	-	2e+0	At4g38630	RPN10 (REGULATORY PARTICLE NON-ATPASE 10)	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.72	HV02H21u_at	HV02H21u	-	-	4e+0	At4g27900	-	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.72	Contig3281_s_at	Contig3281	-	-	2e-45	At5g57655	xylose isomerase family protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.73	HF11A03r_at	HF11A03r	-	-	2e-1	At3g61980	serine protease inhibitor, Kazal-type family protein	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.73	HO06A21S_at	HO06A21S	-	-	1e-2	At2g44000	-	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.76	Contig20816_at	Contig20816	-	-	1e-1	At4g36780	transcription regulator	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
15.6	99.6	GSM238427	Endosperm 72 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
12.6	99.4	GSM238422	Endosperm 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
9.6	99.0	GSM238420	Endosperm 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
8.1	98.7	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.9	98.7	GSM238423	Endosperm 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.7	97.7	GSM238425	Endosperm 48 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.4	97.5	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.3	97.4	GSM68899	8 h salt stressed replicate 2	GSE3097	Barley1 salinity stress study
5.0	97.2	GSM238426	Endosperm 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.3	96.4	GSM238421	Endosperm 0 h; Seed germination Rep 2	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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