Co-expression analysis

Gene ID	Contig22438_at
Gene name
Homology with Arabidopsis	Similar to At3g27416: unknown protein (HF=4e+0)
Module size	9 genes
NF	0.35
%ile	47.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.48	63.2	0.92	Contig22438_at	Contig22438	-	-	4e+0	At3g27416	unknown protein	O.I.	H.G.	S.X.	Please select
0.59	75.8	0.94	Contig9233_at	Contig9233	-	-	5e-19	At4g13720	inosine triphosphate pyrophosphatase, putative / HAM1 family protein	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.96	Contig9234_at	Contig9234	-	-	2e-1	At1g37000	beta-galactosidase	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.94	Contig21187_at	Contig21187	-	-	1e+0	At3g52420	OEP7 (OUTER ENVELOPE MEMBRANE PROTEIN 7)	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.94	Contig21378_at	Contig21378	-	-	1e-1	At3g24070	zinc knuckle (CCHC-type) family protein	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.95	HK04L13r_s_at	HK04L13r	-	-	4e+0	At5g61240	protein binding	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.94	Contig18112_at	Contig18112	-	-	3e-1	At1g55310	SR33	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.95	Contig20226_at	Contig20226	-	-	4e-14	At3g59570	RabGAP/TBC domain-containing protein	O.I.	H.G.	S.X.	Please select
0.13	11.6	0.94	EBma01_SQ005_G16_at	EBma01_SQ005_G16	-	-	3e+0	At2g01290	ribose-5-phosphate isomerase	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.7	99.2	GSM311205	28-4_with_aphids_2	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
7.7	98.6	GSM311254	hsp5_with_aphids_2	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
7.0	98.4	GSM311261	kara_with_aphids_3	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
5.5	97.6	GSM311260	kara_with_aphids_2	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
5.4	97.5	GSM372991	genotype: 11542 - pathogen isolates: 5874 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
5.4	97.5	GSM372995	genotype: 11542 - pathogen isolates: K1 - time: 8 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
5.1	97.3	GSM311255	hsp5_with_aphids_3	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
4.6	96.8	GSM311204	28-4_with_aphids_1	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
4.3	96.4	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
4.0	96.0	GSM373001	genotype: 11542 - pathogen isolates: K1 - time: 20 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage