CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig223_s_at

Gene name
Homology with Arabidopsis Similar to At5g56900: CwfJ-like family protein / zinc finger (CCCH-type) family protein (HF=8e-1)

Module size 6 genes

NF 0.46

%ile 64.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.53 69.7 0.91 Contig223_s_at Contig223 - - 8e-1 At5g56900 CwfJ-like family protein / zinc finger (CCCH-type) family protein O.I. H.G. S.X.
0.67 84.7 0.93 HO15C14S_s_at HO15C14S - - 2e+0 At5g55210 unknown protein O.I. H.G. S.X.
0.67 84.7 0.93 baak1o23_s_at baak1o23 - - 1e+1 At4g18070 unknown protein O.I. H.G. S.X.
0.60 77.3 0.91 Contig10887_at Contig10887 - - 3e-10 At1g53390 ATPase, coupled to transmembrane movement of substances O.I. H.G. S.X.
0.43 56.4 0.93 HVSMEh0085G19f_at HVSMEh0085G19f - - 3e+0 At1g75510 transcription initiation factor IIF beta subunit (TFIIF-beta) family protein O.I. H.G. S.X.
0.22 24.2 0.91 Contig14349_at Contig14349 - - 1e+1 Atmg00010 - O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.53	69.7	0.91	Contig223_s_at	Contig223	-	-	8e-1	At5g56900	CwfJ-like family protein / zinc finger (CCCH-type) family protein	O.I.	H.G.	S.X.
0.67	84.7	0.93	HO15C14S_s_at	HO15C14S	-	-	2e+0	At5g55210	unknown protein	O.I.	H.G.	S.X.
0.67	84.7	0.93	baak1o23_s_at	baak1o23	-	-	1e+1	At4g18070	unknown protein	O.I.	H.G.	S.X.
0.60	77.3	0.91	Contig10887_at	Contig10887	-	-	3e-10	At1g53390	ATPase, coupled to transmembrane movement of substances	O.I.	H.G.	S.X.
0.43	56.4	0.93	HVSMEh0085G19f_at	HVSMEh0085G19f	-	-	3e+0	At1g75510	transcription initiation factor IIF beta subunit (TFIIF-beta) family protein	O.I.	H.G.	S.X.
0.22	24.2	0.91	Contig14349_at	Contig14349	-	-	1e+1	Atmg00010	-	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.92	98.4	0.89	Contig18751_at	Contig18751	-	-	2e+0	At2g18721	unknown protein	O.I.	H.G.	S.X.
0.67	84.7	0.90	Contig15855_at	Contig15855	-	-	2e+0	At1g48325	Expressed protein	O.I.	H.G.	S.X.
0.55	72.0	0.89	Contig19668_at	Contig19668	-	-	1e-1	At5g47610	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.53	69.7	0.86	Contig10197_at	Contig10197	-	-	2e-10	At1g16540	ABA3 (ABA DEFICIENT 3)	O.I.	H.G.	S.X.
0.50	66.9	0.83	Contig15653_at	Contig15653	-	-	1e-1	At3g62260	protein phosphatase 2C, putative / PP2C, putative	O.I.	H.G.	S.X.
0.50	66.9	0.91	Contig26340_at	Contig26340	-	-	4e+0	At4g19200	proline-rich family protein	O.I.	H.G.	S.X.
0.47	62.2	0.87	Contig19922_at	Contig19922	-	-	2e+1	At5g15460	MUB2 (MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 2)	O.I.	H.G.	S.X.
0.46	61.0	0.92	Contig15714_at	Contig15714	-	-	2e-6	At2g48010	RKF3 (RECEPTOR-LIKE KINASE IN IN FLOWERS 3)	O.I.	H.G.	S.X.
0.43	56.4	0.85	Contig10444_at	Contig10444	-	-	6e-1	At5g42232	-	O.I.	H.G.	S.X.
0.40	53.1	0.85	Contig15753_at	Contig15753	-	-	5e-1	At3g16870	zinc finger (GATA type) family protein	O.I.	H.G.	S.X.
0.40	53.1	0.86	Contig21801_at	Contig21801	-	-	1e-1	At5g25490	zinc finger (Ran-binding) family protein	O.I.	H.G.	S.X.
0.40	53.1	0.89	Contig75_x_at	Contig75	-	-	8e-45	At1g09200	histone H3	O.I.	H.G.	S.X.
0.36	47.1	0.84	EBpi01_SQ001_G04_at	EBpi01_SQ001_G04	-	-	6e+0	At3g63030	MBD4	O.I.	H.G.	S.X.
0.36	47.1	0.84	Contig6775_at	Contig6775	-	-	5e-3	At4g30120	HMA3 (HEAVY METAL ATPASE 3)	O.I.	H.G.	S.X.
0.36	47.1	0.86	HW08J24V_at	HW08J24V	-	-	5e+0	At4g09840	unknown protein	O.I.	H.G.	S.X.
0.36	47.1	0.87	HV05C06u_x_at	HV05C06u	-	-	1e+0	At1g79910	unknown protein	O.I.	H.G.	S.X.
0.35	45.1	0.89	Contig17843_at	Contig17843	-	-	8e+0	At5g64010	unknown protein	O.I.	H.G.	S.X.
0.35	45.1	0.83	HS16J06u_at	HS16J06u	-	-	2e+1	At5g59950	RNA and export factor-binding protein, putative	O.I.	H.G.	S.X.
0.34	43.6	0.86	Contig15158_at	Contig15158	-	-	1e-11	At5g65090	BST1 (BRISTLED 1)	O.I.	H.G.	S.X.
0.32	40.3	0.81	Contig19735_at	Contig19735	-	-	2e-3	At5g19690	STT3A (STAUROSPORIN AND TEMPERATURE SENSITIVE 3-LIKE A)	O.I.	H.G.	S.X.
0.31	38.6	0.83	HO14E18S_at	HO14E18S	-	-	8e-1	At5g33898	unknown protein	O.I.	H.G.	S.X.
0.31	38.6	0.90	Contig12688_at	Contig12688	-	-	9e-2	At1g79800	plastocyanin-like domain-containing protein	O.I.	H.G.	S.X.
0.30	37.0	0.91	Contig18846_at	Contig18846	-	-	4e+0	At3g27831	-	O.I.	H.G.	S.X.
0.29	35.5	0.88	Contig7519_at	Contig7519	-	-	1e-13	At1g03150	GCN5-related N-acetyltransferase (GNAT) family protein	O.I.	H.G.	S.X.
0.29	35.5	0.89	Contig18090_at	Contig18090	-	-	6e+0	At5g42070	unknown protein	O.I.	H.G.	S.X.
0.29	35.5	0.89	Contig6996_at	Contig6996	-	-	5e-2	At1g23850	unknown protein	O.I.	H.G.	S.X.
0.29	35.5	0.91	HS06J22u_s_at	HS06J22u	-	-	7e-5	At5g27520	PNC2 (PEROXISOMAL ADENINE NUCLEOTIDE CARRIER 2)	O.I.	H.G.	S.X.
0.28	35.5	0.85	EBro01_SQ005_L10_at	EBro01_SQ005_L10	-	-	1e+1	Atmg01320	-	O.I.	H.G.	S.X.
0.27	32.1	0.78	Contig18402_at	Contig18402	-	-	4e+0	At5g37290	armadillo/beta-catenin repeat family protein	O.I.	H.G.	S.X.
0.27	32.1	0.84	HVSMEb0012I19r2_at	HVSMEb0012I19r2	-	-	2e+0	At1g68310	vacuolar sorting signal binding	O.I.	H.G.	S.X.
0.27	32.1	0.85	Contig3750_at	Contig3750	-	-	2e+0	At3g25740	MAP1B (METHIONINE AMINOPEPTIDASE 1C)	O.I.	H.G.	S.X.
0.26	30.4	0.85	Contig11226_s_at	Contig11226	-	-	4e+0	At1g32360	zinc finger (CCCH-type) family protein	O.I.	H.G.	S.X.
0.25	28.9	0.89	Contig21260_at	Contig21260	-	-	1e+0	At1g29490	auxin-responsive family protein	O.I.	H.G.	S.X.
0.25	28.9	0.90	Contig5533_at	Contig5533	-	-	2e-7	At4g33070	pyruvate decarboxylase, putative	O.I.	H.G.	S.X.
0.25	28.9	0.91	Contig12777_at	Contig12777	-	-	4e-9	At1g04900	unknown protein	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
30.0 99.9 GSM215731 gibberellin treatment rep2 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
21.0 99.7 GSM382237 Root_Control3 GSE15295 Mercury toxicity in barley roots
15.0 99.5 GSM372984 genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
14.0 99.5 GSM261042 before 3 days in mannitol medium rep1 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
9.3 99.0 GSM215728 gibberellin treatment rep1 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
8.5 98.8 GSM372987 genotype: 11542 - pathogen isolates: 5874 - time: 24 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
7.1 98.4 GSM215732 gibberellin plus Yariv-reagent treatment rep2 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
6.5 98.2 GSM372988 genotype: 11542 - pathogen isolates: 5874 - time: 24 - rep3 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
6.5 98.2 GSM372981 genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
5.8 97.8 GSM372982 genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep3 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
30.0	99.9	GSM215731	gibberellin treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
21.0	99.7	GSM382237	Root_Control3	GSE15295	Mercury toxicity in barley roots
15.0	99.5	GSM372984	genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
14.0	99.5	GSM261042	before 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
9.3	99.0	GSM215728	gibberellin treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
8.5	98.8	GSM372987	genotype: 11542 - pathogen isolates: 5874 - time: 24 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
7.1	98.4	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
6.5	98.2	GSM372988	genotype: 11542 - pathogen isolates: 5874 - time: 24 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
6.5	98.2	GSM372981	genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
5.8	97.8	GSM372982	genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	Contig223_s_at
Gene name
Homology with Arabidopsis	Similar to At5g56900: CwfJ-like family protein / zinc finger (CCCH-type) family protein (HF=8e-1)
Module size	6 genes
NF	0.46
%ile	64.2

Co-expression analysis

Gene ID Contig223_s_at Gene name Homology with ArabidopsisSimilar to At5g56900: CwfJ-like family protein / zinc finger (CCCH-type) family protein (HF=8e-1) Module size 6 genes NF 0.46 %ile 64.2

Co-expressed genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Contig223_s_at

Gene name
Homology with Arabidopsis Similar to At5g56900: CwfJ-like family protein / zinc finger (CCCH-type) family protein (HF=8e-1)

Module size 6 genes

NF 0.46

%ile 64.2

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays