Co-expression analysis

Gene ID	Contig223_s_at
Gene name
Homology with Arabidopsis	Similar to At5g56900: CwfJ-like family protein / zinc finger (CCCH-type) family protein (HF=8e-1)
Module size	6 genes
NF	0.46
%ile	64.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	69.7	0.91	Contig223_s_at	Contig223	-	-	8e-1	At5g56900	CwfJ-like family protein / zinc finger (CCCH-type) family protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.93	HO15C14S_s_at	HO15C14S	-	-	2e+0	At5g55210	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.93	baak1o23_s_at	baak1o23	-	-	1e+1	At4g18070	unknown protein	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.91	Contig10887_at	Contig10887	-	-	3e-10	At1g53390	ATPase, coupled to transmembrane movement of substances	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.93	HVSMEh0085G19f_at	HVSMEh0085G19f	-	-	3e+0	At1g75510	transcription initiation factor IIF beta subunit (TFIIF-beta) family protein	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.91	Contig14349_at	Contig14349	-	-	1e+1	Atmg00010	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
30.0	99.9	GSM215731	gibberellin treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
21.0	99.7	GSM382237	Root_Control3	GSE15295	Mercury toxicity in barley roots
15.0	99.5	GSM372984	genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
14.0	99.5	GSM261042	before 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
9.3	99.0	GSM215728	gibberellin treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
8.5	98.8	GSM372987	genotype: 11542 - pathogen isolates: 5874 - time: 24 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
7.1	98.4	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
6.5	98.2	GSM372988	genotype: 11542 - pathogen isolates: 5874 - time: 24 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
6.5	98.2	GSM372981	genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
5.8	97.8	GSM372982	genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

Inter-species module comparison

A co-expression module including the rice gene, Os.36283.1.S1_at, orthologous to the query gene, Contig223_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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