Co-expression analysis

Gene ID	Contig22370_at
Gene name
Homology with Arabidopsis	Similar to At1g29160: Dof-type zinc finger domain-containing protein (HF=5e-3)
Module size	6 genes
NF	0.58
%ile	79.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.91	Contig22370_at	Contig22370	-	-	5e-3	At1g29160	Dof-type zinc finger domain-containing protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.89	Contig10796_at	Contig10796	-	-	1e-7	At5g19350	RNA-binding protein 45 (RBP45), putative	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.91	HV_CEb0016D06r2_at	HV_CEb0016D06r2	-	-	1e+0	At2g23320	WRKY15	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.90	Contig14226_at	Contig14226	-	-	2e-7	At3g12900	oxidoreductase, 2OG-Fe(II) oxygenase family protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.90	Contig6384_at	Contig6384	-	-	8e-20	At3g13460	ECT2	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.91	Contig24256_at	Contig24256	-	-	4e+0	At5g44420	PDF1.2	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
42.5	99.9	GSM261044	before 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
12.8	99.4	GSM261043	before 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
11.3	99.3	GSM261042	before 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.8	97.0	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
3.5	95.1	GSM398250	Martin_0d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.4	94.8	GSM261040	Dicktoo-deacclimation-rep2	GSE10329	Low temperature stress in cv. Dicktoo
3.1	94.1	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.0	93.8	GSM160823	19% SWC rep1	GSE6990	Barley drought stress
2.9	93.4	GSM419977	Palea_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
2.9	93.4	GSM440965	Control palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage