Co-expression analysis

Gene ID Contig22226_at
Gene name
Homology with ArabidopsisSimilar to At3g04670: WRKY39 (HF=6e-6)
Module size 7 genes
NF 0.18
%ile 22.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7589.50.95Contig22226_atContig22226--6e-6At3g04670WRKY39O.I.H.G.S.X.
0.3240.30.95Contig25987_atContig25987--2e+0At3g61180zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.2935.50.95Contig3131_atContig3131--6e-6At4g00860ATOZI1O.I.H.G.S.X.
0.2326.10.96rbags16k21_s_atrbags16k21--1e+1At3g51520diacylglycerol acyltransferase familyO.I.H.G.S.X.
0.119.40.95Contig4271_atContig4271--2e+0At4g09440unknown proteinO.I.H.G.S.X.
0.108.40.95Contig7004_atContig7004--2e+0At4g21320HSA32 (HEAT-STRESS-ASSOCIATED 32)O.I.H.G.S.X.
0.097.40.95Contig15363_atContig15363--2e+0At3g44980unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.198.7GSM282020Malting_day4_Legacy_rep 3GSE11200Expression data from malting barley seedsLink to GEO
5.997.9GSM238433Embryo 0 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.397.4GSM282032Malting_day1_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO
5.097.2GSM372991genotype: 11542 - pathogen isolates: 5874 - time: 32 - rep3GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
4.997.1GSM238411Pericarp 8DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.496.6GSM372995genotype: 11542 - pathogen isolates: K1 - time: 8 - rep1GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
4.396.4GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.096.0GSM282035Malting_day4_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO
4.096.0GSM282040Malting_kilned_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
3.895.7GSM372953genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep1GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At3g04670, orthologous to the query gene, Contig22226_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
0.9797.6At3g04670819625WRKY39member of WRKY Transcription Factor; Group II-dO.I.H.G.S.X.
0.4659.8At5g66950836829catalytic/ pyridoxal phosphate bindingF:pyridoxal phosphate binding, catalytic activity;P:biological_process unknown;C:plasma membrane;PMFOBAO.I.H.G.S.X.
0.4050.8At3g28690822499protein kinase, putativeF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVAO.I.H.G.S.X.
0.3846.7At1g71010843440phosphatidylinositol-4-phosphate 5-kinase family proteinF:1-phosphatidylinositol-4-phosphate 5-kinase activity, protein binding, phosphatidylinositol phosphate kinase activity, ATP binding;P:phosphatidylinositol metabolic process, cellular protein metabolic process;C:cellular_component unknown;MOFPABO.I.H.G.S.X.
0.3541.6At1g34370840339STOP1 (sensitive to proton rhizotoxicity 1)Encodes a putative nuclear Cys(2)His(2)-type zinc finger protein involved in H+ and Al3+ rhizotoxicity. In mutants exposed to aluminum stress, there is no induction of AtALMT1, an malate transporter known to be involved in the mediation of aluminum toxicity.O.I.H.G.S.X.
0.3439.8At1g52420841673glycosyl transferase family 1 proteinF:transferase activity, transferring glycosyl groups;P:biosynthetic process;C:unknown;BOAPFMO.I.H.G.S.X.
0.3338.1At4g24400828542CIPK8 (CBL-INTERACTING PROTEIN KINASE 8)Encodes a CBL (calcineurin B-like calcium sensor proteins) -interacting serine/threonine protein kinase.O.I.H.G.S.X.
0.3338.1At5g12200831093dihydropyrimidinase / DHPase / dihydropyrimidine amidohydrolase / hydantoinase (PYD2)F:hydrolase activity, hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, dihydropyrimidinase activity;P:unknown;C:endomembrane system;OBMAFPO.I.H.G.S.X.
0.3338.1At4g24520828554ATR1 (ARABIDOPSIS P450 REDUCTASE 1)Encodes a cyp450 reductase likely to be involved in phenylpropanoid metabolism.O.I.H.G.S.X.
0.3235.7At3g12950820480catalyticF:catalytic activity;P:biological_process unknown;C:cellular_component unknown;PBOFO.I.H.G.S.X.
0.3235.7At3g49590824121-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBVO.I.H.G.S.X.
0.3235.7At5g41940834199RabGAP/TBC domain-containing proteinF:RAB GTPase activator activity;P:regulation of Rab GTPase activity;C:intracellular;MOFPBVAO.I.H.G.S.X.
0.3133.8At3g03380821268DegP7 (DegP protease 7)Encodes a putative DegP protease.O.I.H.G.S.X.
0.2930.3At2g18090816321PHD finger family protein / SWIB complex BAF60b domain-containing protein / GYF domain-containing proteinF:protein binding, DNA binding, zinc ion binding;P:regulation of transcription, DNA-dependent;C:unknown;MPBOFO.I.H.G.S.X.
0.2830.3At1g15750838144TPL (TOPLESS)Encodes a protein with several WD40 repeats at the C-terminus and predicted protein-protein interaction domains at the N-terminus. Together with the TOPLESS-RELATED PROTEINS (TPRs), it is thought to be involved in transcriptional repression of root-promoting genes in the top half of the embryo during the transition stage of embryogenesis. It can also interact with IAA12 through the EAR domain of IAA12 and the CTLH domain of TPL. The ability of IAA12 to repress transcription is diminished in a tpl-1 mutant background.O.I.H.G.S.X.
0.2830.3At2g15240816013UNC-50 family proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;MFPOO.I.H.G.S.X.
0.2830.3At1g08680837390ZIGA4 (ARF GAP-like zinc finger-containing protein ZiGA4)A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. AGD14 belongs to the class 4, together with AGD15.O.I.H.G.S.X.
0.2726.2At4g40050830168signal transducerF:signal transducer activity;P:biological_process unknown;C:cellular_component unknown;MPOO.I.H.G.S.X.
0.2726.2At1g18160838395protein kinase family proteinF:protein serine/threonine/tyrosine kinase activity, kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOFBVAO.I.H.G.S.X.
0.2624.4At3g18990821432VRN1 (REDUCED VERNALIZATION RESPONSE 1)Required for vernalization. Essential for the complete repression of FLC in vernalized plants. Required for the methylation of histone H3O.I.H.G.S.X.
0.2624.4At1g09730837501Ulp1 protease family proteinF:cysteine-type peptidase activity;P:proteolysis;C:cellular_component unknown;MOFPBVAO.I.H.G.S.X.
0.2624.4At1g66340842951ETR1 (ETHYLENE RESPONSE 1)Similar to prokaryote sensory transduction proteins. Contains a histidine kinase and a response regulator domain. Homodimer. Membrane component. Binds ethylene. Mutations affect ethylene binding and metabolism of other plant hormones such as auxin, cytokinins, ABA and gibberellic acid. Ethylene receptor. Has histidine kinase activity. Is regulated by RTE1.O.I.H.G.S.X.
0.2624.4At1g17210838292zinc ion bindingF:zinc ion binding;P:unknown;C:cytosol, nucleus, phragmoplast;OMPFBAO.I.H.G.S.X.
0.2522.6At1g35220840411unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPO.I.H.G.S.X.
0.2522.6At1g32230840115RCD1 (RADICAL-INDUCED CELL DEATH1)Encodes a protein belonging to the (ADP-ribosyl)transferase domain-containing subfamily of WWE protein-protein interaction domain protein family. Superoxide radicals are necessary and sufficient to propagate cell death or lesion formation in rcd1 mutants. Without stress treatment, RCD1 is localized in the nucleus. Under high salt or oxidative stress, RCD1 is found not only in the nucleus but also in the cytoplasm.O.I.H.G.S.X.
0.2522.6At5g35200833474epsin N-terminal homology (ENTH) domain-containing proteinF:phospholipid binding, clathrin binding, binding, phosphatidylinositol binding;P:clathrin coat assembly;C:plasma membrane;MPFOBO.I.H.G.S.X.
0.2420.7At1g34320840333unknown proteinF:unknown;P:N-terminal protein myristoylation;C:plasma membrane;PMBO.I.H.G.S.X.
0.2420.7At3g04740819634SWP (STRUWWELPETER)encodes a protein with similarities to subunits of the Mediator complex, required for RNA polymerase II recruitment at target promoters in response to specific activators. Lines carrying loss of function mutations in the gene have reduced cell numbers in aerial organs. On the other hand, lines overexpressing the gene have increased number of small cells in clusters, suggesting cell division is more unsynchronized in the overexpressors.O.I.H.G.S.X.
0.2420.7At1g08620837384transcription factorF:transcription factor activity;P:regulation of transcription;C:nucleus;MFPOO.I.H.G.S.X.
0.2420.7At1g72710843603CKL2 (CASEIN KINASE 1-LIKE PROTEIN 2)Encodes a member of the casein kinase 1 protein family that is localized to the cytoplasm and nucleus.O.I.H.G.S.X.
0.2420.7At1g67580843079protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cytosol;MOPFBVAO.I.H.G.S.X.
0.2319.3At5g18110831929NCBP (NOVEL CAP-BINDING PROTEIN)F:RNA binding, translation initiation factor activity;P:translational initiation;C:cytoplasm;MOFPO.I.H.G.S.X.
0.2319.3At5g07270830618ankyrin repeat family proteinF:ubiquitin-protein ligase activity, protein binding;P:N-terminal protein myristoylation;C:unknown;MOFBPVAO.I.H.G.S.X.
0.2319.3At1g54490841891XRN4 (EXORIBONUCLEASE 4)Involved in the ethylene response. XRN4 does not appear to regulate ethylene signaling via an RNA-INDUCED SILENCING COMPLEX-based RNA silencing mechanism but acts by independent means. Endogenous suppressor of posttranscriptional gene silencing.O.I.H.G.S.X.
0.2319.3At5g63640836484VHS domain-containing protein / GAT domain-containing proteinF:protein transporter activity;P:intracellular protein transport, intra-Golgi vesicle-mediated transport;C:Golgi stack, plasma membrane;MFPOBO.I.H.G.S.X.
0.2319.3At2g38020818380VCL1 (VACUOLELESS 1)necessary for proper vacuole formation and morphogenesis in ArabidopsisO.I.H.G.S.X.
0.2217.5At2g45330819141emb1067 (embryo defective 1067)F:tRNA 2'-phosphotransferase activity, transferase activity, transferring phosphorus-containing groups;P:embryonic development ending in seed dormancy, tRNA splicing, via endonucleolytic cleavage and ligation;C:unknown;BFOMAPVO.I.H.G.S.X.
0.2217.5At5g12290831104DGS1 (DGD1 SUPPRESSOR 1)Encodes a mitochondrial outer membrane protein, involved in galactoglycerolipid biosynthesis. The dgd1 mutant phenotype is suppressed in the dgs1 mutant background.O.I.H.G.S.X.
0.2217.5At1g33980840295Smg-4/UPF3 family proteinInvolved in mRNA surveillance, detects exported mRNAs with truncated open reading frames and initiates nonsense-mediated mRNA decay (NMD)O.I.H.G.S.X.
0.2217.5At3g01300820989protein kinase, putativeF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAO.I.H.G.S.X.
0.2115.8At1g05090839327dentin sialophosphoprotein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOFPAVO.I.H.G.S.X.
0.2115.8At5g61500836271ATG3F:molecular_function unknown;P:autophagy;C:cellular_component unknown;MFOPO.I.H.G.S.X.
0.2115.8At3g48680824029GAMMA CAL2 (GAMMA CARBONIC ANHYDRASE-LIKE 2)Encodes a mitochondrial gamma carbonic anhydrase-like protein. Component of the NADH dehydrogenase complex.O.I.H.G.S.X.
0.2115.8At3g59770825146SAC9Encodes a phosphoinositide phosphatase. The sac9 null mutant accumulates elevated levels of PtdIns(4,5)P2 and Ins(1,4,5)P3. The mutant plants have characteristics of constitutive stress responses.O.I.H.G.S.X.
0.2014.4At3g60600825231VAP (VESICLE ASSOCIATED PROTEIN)Encodes VAP27 (for Vesicle-Associated Protein). VAP27 has high homology to the VAP33 family of SNARE-like proteins from animals. May be involved in vesicular transport to or from the ER. Located exclusively in limiting membrane of protein storage vacuoles. Binds SRC2.O.I.H.G.S.X.
0.2014.4At2g336308179293-beta hydroxysteroid dehydrogenase/isomerase family proteinF:3-beta-hydroxy-delta5-steroid dehydrogenase activity, binding, catalytic activity;P:steroid biosynthetic process, metabolic process;C:endoplasmic reticulum;BOMAFPVO.I.H.G.S.X.
0.2014.4At1g50200841442ALATS (ALANYL-TRNA SYNTHETASE)F:alanine-tRNA ligase activity, ligase activity, forming aminoacyl-tRNA and related compounds, nucleotide binding, nucleic acid binding, ATP binding;P:alanyl-tRNA aminoacylation, response to cadmium ion;C:mitochondrion, chloroplast;OBMAFPO.I.H.G.S.X.
0.2014.4At1g79030844244DNAJ heat shock N-terminal domain-containing protein / S-locus protein, putativeF:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMFPAVO.I.H.G.S.X.
0.2014.4At3g07690819960NAD or NADH binding / binding / catalytic/ coenzyme binding / glycerol-3-phosphate dehydrogenase (NAD+)/ oxidoreductase/ oxidoreductase, acting on CH-OH group of donors / oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptorF:in 8 functions;P:glycerol-3-phosphate catabolic process, glycerol-3-phosphate metabolic process, carbohydrate metabolic process, metabolic process;C:glycerol-3-phosphate dehydrogenase complex, cytoplasm;BOMPFAO.I.H.G.S.X.
0.2014.4At1g08370837357DCP1 (decapping 1)Encodes DCP1 involved in mRNA decapping. DCP1 forms a mRNA decapping complex with DCP2 (At5g13570) and VCS (VARICOSE) (At3g13300). However, unlike DCP2, DCP1 itself does not have mRNA decapping activity in vitro. DCP1, DCP2 and VCS colocalize in cytoplasmic loci, which are putative Arabidopsis mRNA processing bodies. Null mutants of DCP1, DCP2, and VCS accumulate capped mRNAs with a reduced degradation rate. These mutants also share a similar lethal phenotype at the seedling cotyledon stage, with disorganized veins, swollen root hairs, and altered epidermal cell morphology. The protein was shown by immunoprecipitation not to interact with DCP2.O.I.H.G.S.X.
0.1912.7At2g04940815041scramblase-relatedF:molecular_function unknown;P:biological_process unknown;C:mitochondrion, plastid;MFPBOO.I.H.G.S.X.
0.1912.7At5g05080830390UBC22 (ubiquitin-conjugating enzyme 22)F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;MFOPVO.I.H.G.S.X.
0.1912.7At5g07940830688-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPAO.I.H.G.S.X.
0.1811.4At5g05700830454ATE1 (ARGININE-TRNA PROTEIN TRANSFERASE 1)Encodes an arginyl-tRNA:protein transferase (ATE1), a component of the N-end rule pathway that targets protein degradation through the identity of the amino-terminal residue of specific protein substrates. Arabidopsis contains two ATE genes: At5g05700/ATE1, At3g11240/ATE2. Another component of the N-end rule pathway is At5g02310/PROTEOLYSIS6 (PRT6). PRT6 and ATE were shown to regulate seed after-ripening, seedling sugar sensitivity, seedling lipid breakdown, and abscisic acid (ABA) sensitivity of germination. Mutants of ATE1 also display delayed leaf senescence.O.I.H.G.S.X.
0.1811.4At5g05980830484ATDFB (A. THALIANA DHFS-FPGS HOMOLOG B)F:tetrahydrofolylpolyglutamate synthase activity;P:one-carbon compound metabolic process;C:chloroplast stroma;BOFMPAO.I.H.G.S.X.
0.1811.4At2g20010816520-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.H.G.S.X.
0.1811.4At5g19050832024unknown proteinF:unknown;P:biological_process unknown;C:chloroplast;FOBMPVO.I.H.G.S.X.
0.1811.4At2g47900819402AtTLP3 (TUBBY LIKE PROTEIN 3)Member of TLP familyO.I.H.G.S.X.
0.1710.2At5g55500835643XYLT (ARABIDOPSIS THALIANA BETA-1,2-XYLOSYLTRANSFERASE)Encodes a beta-1,2-xylosyltransferase that is glycosylated at two positions.O.I.H.G.S.X.
0.1710.2At3g26810822296AFB2 (AUXIN SIGNALING F-BOX 2)F:auxin binding, ubiquitin-protein ligase activity;P:stamen development, pollen maturation, response to molecule of bacterial origin;C:plasma membrane;PMOFBO.I.H.G.S.X.
0.1710.2At3g13670820572protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MBOPFVAO.I.H.G.S.X.
0.1710.2At4g04860825823DER2.2 (DERLIN-2.2)F:unknown;P:proteolysis;C:cellular_component unknown;MOFPO.I.H.G.S.X.
0.1710.2At5g43320834350ckl8 (Casein Kinase I-like 8)F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOPBFVAO.I.H.G.S.X.
0.1710.2At3g13290820529VCR (VARICOSE-RELATED)F:nucleotide binding;P:unknown;C:cellular_component unknown;MBOFPAO.I.H.G.S.X.
0.168.8At5g51340835208unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBO.I.H.G.S.X.
0.168.8At4g21450826300vesicle-associated membrane family protein / VAMP family proteinF:structural molecule activity;P:biological_process unknown;C:plasma membrane;MOFPBVO.I.H.G.S.X.
0.168.8At1g62880842589cornichon family proteinF:molecular_function unknown;P:intracellular signaling cascade;C:endomembrane system, membrane;MFPOO.I.H.G.S.X.
0.168.8At2g05230815071DNAJ heat shock N-terminal domain-containing proteinF:heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMPFAVO.I.H.G.S.X.
0.168.8At3g17900821058unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFOO.I.H.G.S.X.
0.157.8At3g03570821234-F:molecular_function unknown;P:biological_process unknown;C:cytosol;MPOO.I.H.G.S.X.
0.146.8At1g26640839204aspartate/glutamate/uridylate kinase family proteinF:molecular_function unknown;P:amino acid biosynthetic process;C:cellular_component unknown;BAOPMO.I.H.G.S.X.
0.146.8At3g04560819612unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;MPFOBVO.I.H.G.S.X.
0.124.9At4g17486827462unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFO.I.H.G.S.X.
0.124.9At5g52240835300MSBP1 (membrane steroid binding protein 1)Encodes a protein with similarity to progesterone-binding proteins in animals. Has been shown to bind steroids in vitro. Expressed in aerial portions of the plant excluding mature flowers and siliques. Antisense experiments suggest a role in inhibition of hypocotyl cell elongation. Expression is suppressed light grown seedlings transferred to the dark.O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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