Co-expression analysis

Gene ID	Contig22226_at
Gene name
Homology with Arabidopsis	Similar to At3g04670: WRKY39 (HF=6e-6)
Module size	7 genes
NF	0.18
%ile	22.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.75	89.5	0.95	Contig22226_at	Contig22226	-	-	6e-6	At3g04670	WRKY39	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.95	Contig25987_at	Contig25987	-	-	2e+0	At3g61180	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.95	Contig3131_at	Contig3131	-	-	6e-6	At4g00860	ATOZI1	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.96	rbags16k21_s_at	rbags16k21	-	-	1e+1	At3g51520	diacylglycerol acyltransferase family	O.I.	H.G.	S.X.	Please select
0.11	9.4	0.95	Contig4271_at	Contig4271	-	-	2e+0	At4g09440	unknown protein	O.I.	H.G.	S.X.	Please select
0.10	8.4	0.95	Contig7004_at	Contig7004	-	-	2e+0	At4g21320	HSA32 (HEAT-STRESS-ASSOCIATED 32)	O.I.	H.G.	S.X.	Please select
0.09	7.4	0.95	Contig15363_at	Contig15363	-	-	2e+0	At3g44980	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.1	98.7	GSM282020	Malting_day4_Legacy_rep 3	GSE11200	Expression data from malting barley seeds
5.9	97.9	GSM238433	Embryo 0 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.3	97.4	GSM282032	Malting_day1_Morex_rep1	GSE11200	Expression data from malting barley seeds
5.0	97.2	GSM372991	genotype: 11542 - pathogen isolates: 5874 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.9	97.1	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.4	96.6	GSM372995	genotype: 11542 - pathogen isolates: K1 - time: 8 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.3	96.4	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.0	96.0	GSM282035	Malting_day4_Morex_rep1	GSE11200	Expression data from malting barley seeds
4.0	96.0	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds
3.8	95.7	GSM372953	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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