CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig22190_s_at

Gene name
Homology with Arabidopsis Similar to At4g27745: - (HF=4e-2)

Module size 6 genes

NF 0.53

%ile 73.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.60 77.3 0.87 Contig22190_s_at Contig22190 - - 4e-2 At4g27745 - O.I. H.G. S.X.
0.80 92.5 0.88 Contig18641_at Contig18641 - - 5e-4 At1g68850 peroxidase, putative O.I. H.G. S.X.
0.67 84.7 0.85 Contig23267_at Contig23267 - - 5e+0 At3g03830 auxin-responsive protein, putative O.I. H.G. S.X.
0.50 66.9 0.87 S0001100116E08F1_x_at S0001100116E08F1 - - 1e+1 At3g29639 - O.I. H.G. S.X.
0.38 49.5 0.85 Contig17857_at Contig17857 - - 4e-5 At3g02600 LPP3 (LIPID PHOSPHATE PHOSPHATASE 3) O.I. H.G. S.X.
0.23 26.1 0.88 HB25K17r_at HB25K17r - - 2e+0 At4g09260 unknown protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	84.7	0.83	Contig23855_at	Contig23855	-	-	6e-5	At1g19340	methyltransferase MT-A70 family protein	O.I.	H.G.	S.X.
0.38	49.5	0.84	HVSMEl0011N19r2_x_at	HVSMEl0011N19r2	-	-	5e-1	At5g51900	cytochrome P450 family	O.I.	H.G.	S.X.
0.29	35.5	0.83	Contig8722_at	Contig8722	-	-	3e-3	At4g23500	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	O.I.	H.G.	S.X.
0.22	24.2	0.77	Contig16372_at	Contig16372	-	-	5e+0	At3g63190	RRF (RIBOSOME RECYCLING FACTOR, CHLOROPLAST PRECURSOR)	O.I.	H.G.	S.X.
0.22	24.2	0.83	HVSMEn0009M15f_s_at	HVSMEn0009M15f	-	-	1e-3	At1g32400	TOM2A (TOBAMOVIRUS MULTIPLICATION 2A)	O.I.	H.G.	S.X.
0.22	24.2	0.87	Contig1648_at	Contig1648	-	-	3e-18	At1g66200	ATGSR2	O.I.	H.G.	S.X.
0.21	22.6	0.85	Contig2267_s_at	Contig2267	ADP-glucose pyrophosphorylase small subunit	-	1e-135	At5g48300	ADG1 (ADP GLUCOSE PYROPHOSPHORYLASE 1)	O.I.	H.G.	S.X.
0.18	18.2	0.79	EBes01_SQ002_D15_at	EBes01_SQ002_D15	-	-	5e-2	At1g15370	-	O.I.	H.G.	S.X.
0.17	16.9	0.83	Contig26363_at	Contig26363	-	-	4e+0	At5g42325	transcription elongation factor-related	O.I.	H.G.	S.X.
0.15	14.1	0.86	Contig408_at	Contig408	-	-	1e+0	At1g03600	photosystem II family protein	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
16.1 99.6 GSM431547 pathogen isolates: Mock - rep2 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
9.8 99.1 GSM382237 Root_Control3 GSE15295 Mercury toxicity in barley roots
9.4 99.0 GSM382232 Root_Hg1 GSE15295 Mercury toxicity in barley roots
8.8 98.9 GSM382234 Root_Hg3 GSE15295 Mercury toxicity in barley roots
7.4 98.5 GSM311263 kara_without_aphids_2 GSE12584 Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
7.4 98.5 GSM431569 pathogen isolates: Mock inoculated control - rep2 GSE17240 Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
7.2 98.5 GSM382233 Root_Hg2 GSE15295 Mercury toxicity in barley roots
6.3 98.1 GSM431549 pathogen isolates: Polymyxa graminis - rep1 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.8 97.0 GSM382235 Root_Control1 GSE15295 Mercury toxicity in barley roots
4.8 97.0 GSM382236 Root_Control2 GSE15295 Mercury toxicity in barley roots

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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