Co-expression analysis

Gene ID	Contig22190_s_at
Gene name
Homology with Arabidopsis	Similar to At4g27745: - (HF=4e-2)
Module size	6 genes
NF	0.53
%ile	73.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	77.3	0.87	Contig22190_s_at	Contig22190	-	-	4e-2	At4g27745	-	O.I.	H.G.	S.X.	Please select
0.80	92.5	0.88	Contig18641_at	Contig18641	-	-	5e-4	At1g68850	peroxidase, putative	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.85	Contig23267_at	Contig23267	-	-	5e+0	At3g03830	auxin-responsive protein, putative	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.87	S0001100116E08F1_x_at	S0001100116E08F1	-	-	1e+1	At3g29639	-	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.85	Contig17857_at	Contig17857	-	-	4e-5	At3g02600	LPP3 (LIPID PHOSPHATE PHOSPHATASE 3)	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.88	HB25K17r_at	HB25K17r	-	-	2e+0	At4g09260	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
16.1	99.6	GSM431547	pathogen isolates: Mock - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
9.8	99.1	GSM382237	Root_Control3	GSE15295	Mercury toxicity in barley roots
9.4	99.0	GSM382232	Root_Hg1	GSE15295	Mercury toxicity in barley roots
8.8	98.9	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
7.4	98.5	GSM311263	kara_without_aphids_2	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
7.4	98.5	GSM431569	pathogen isolates: Mock inoculated control - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
7.2	98.5	GSM382233	Root_Hg2	GSE15295	Mercury toxicity in barley roots
6.3	98.1	GSM431549	pathogen isolates: Polymyxa graminis - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.8	97.0	GSM382235	Root_Control1	GSE15295	Mercury toxicity in barley roots
4.8	97.0	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots

Inter-species module comparison

A co-expression module including the maize gene, Zm.13443.1.A1_at, orthologous to the query gene, Contig22190_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	Zm.13443.1.A1_at	At4g27745	Histone H2A	-	4e-11	At5g02560	HTA12	O.I.	H.G.	S.X.	Please select
0.07	2.9	Zm.3165.1.A1_at	At4g27745	terpene synthase 7	-	2e+0	At3g61840	unknown protein	O.I.	H.G.	S.X.	Please select
0.02	0.7	Zm.3200.2.A1_at	At4g27745	hypothetical protein LOC100279839	-	8e-5	At1g74320	choline kinase, putative	O.I.	H.G.	S.X.	Please select
0.02	0.7	Zm.960.1.S1_at	At4g27745	hypothetical protein LOC100274333	-	1e-4	At2g22830	SQE2 (squalene epoxidase 2)	O.I.	H.G.	S.X.	Please select
0.02	0.7	Zm.6522.1.A1_x_at	At4g27745	Hypothetical protein LOC100216568	-	3e-15	At4g03410	peroxisomal membrane protein-related	O.I.	H.G.	S.X.	Please select
0.01	0.3	ZmAffx.1035.1.S1_at	At4g27745	-	-	3e+0	At4g38400	ATEXLA2 (ARABIDOPSIS THALIANA EXPANSIN-LIKE A2)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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