Co-expression analysis

Gene ID Contig22190_s_at
Gene name
Homology with ArabidopsisSimilar to At4g27745: - (HF=4e-2)
Module size 6 genes
NF 0.53
%ile 73.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6077.30.87Contig22190_s_atContig22190--4e-2At4g27745-O.I.H.G.S.X.
0.8092.50.88Contig18641_atContig18641--5e-4At1g68850peroxidase, putativeO.I.H.G.S.X.
0.6784.70.85Contig23267_atContig23267--5e+0At3g03830auxin-responsive protein, putativeO.I.H.G.S.X.
0.5066.90.87S0001100116E08F1_x_atS0001100116E08F1--1e+1At3g29639-O.I.H.G.S.X.
0.3849.50.85Contig17857_atContig17857--4e-5At3g02600LPP3 (LIPID PHOSPHATE PHOSPHATASE 3)O.I.H.G.S.X.
0.2326.10.88HB25K17r_atHB25K17r--2e+0At4g09260unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
16.199.6GSM431547pathogen isolates: Mock - rep2GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
9.899.1GSM382237Root_Control3GSE15295Mercury toxicity in barley rootsLink to GEO
9.499.0GSM382232Root_Hg1GSE15295Mercury toxicity in barley rootsLink to GEO
8.898.9GSM382234Root_Hg3GSE15295Mercury toxicity in barley rootsLink to GEO
7.498.5GSM311263kara_without_aphids_2GSE12584Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines Link to GEO
7.498.5GSM431569pathogen isolates: Mock inoculated control - rep2GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betaeLink to GEO
7.298.5GSM382233Root_Hg2GSE15295Mercury toxicity in barley rootsLink to GEO
6.398.1GSM431549pathogen isolates: Polymyxa graminis - rep1GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
4.897.0GSM382235Root_Control1GSE15295Mercury toxicity in barley rootsLink to GEO
4.897.0GSM382236Root_Control2GSE15295Mercury toxicity in barley rootsLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os07g0584000, orthologous to the query gene, Contig22190_s_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9097.1Os07g0584000At4g27745-Yippee-like protein CG153094e+0At3g22510unknown proteinO.I.H.G.S.X.
0.3134.5Os07g0275300At4g27745-Zn-finger, RING domain containing protein9e+0At5g65740protein binding / zinc ion bindingO.I.H.G.S.X.
0.2931.1Os07g0274800At4g27745-B' regulatory subunit of PP2A2e-8At3g26020serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B', putativeO.I.H.G.S.X.
0.2524.1Os12g0631100At4g27745-Ras GTPase family protein1e-8At5g45130RHA1 (RAB HOMOLOG 1)O.I.H.G.S.X.
0.1813.7Os05g0162200At4g27745-Conserved hypothetical protein8e-2At5g13560unknown proteinO.I.H.G.S.X.
0.1510.3Os01g0921400At4g27745-Exo70 exocyst complex subunit family protein2e-2At5g50380ATEXO70F1 (exocyst subunit EXO70 family protein F1)O.I.H.G.S.X.
0.127.2Os03g0359000At4g27745-Esterase/lipase/thioesterase domain containingprotein1e-22At3g23540-O.I.H.G.S.X.
0.105.7Os02g0596500At4g27745-Snf7 family protein1e-7At5g09260VPS20.2 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 20.2)O.I.H.G.S.X.
0.105.7Os03g0776000At4g27745-Glucose-6-phosphate isomerase, cytosolic A (EC5.3.1.9) (GPI-A) (Phosphoglucose isomerase A) (PGI-A)(Phosphohexose isomerase A) (PHI- A)3e-44At5g42740glucose-6-phosphate isomerase, cytosolic (PGIC)O.I.H.G.S.X.
0.042.0Os03g0772800At4g27745-Cytochrome c oxidase, subunit VIa family protein1e-3At4g37830cytochrome c oxidase-relatedO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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