Co-expression analysis

Gene ID Contig22190_s_at
Gene name
Homology with ArabidopsisSimilar to At4g27745: - (HF=4e-2)
Module size 6 genes
NF 0.53
%ile 73.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6077.30.87Contig22190_s_atContig22190--4e-2At4g27745-O.I.H.G.S.X.
0.8092.50.88Contig18641_atContig18641--5e-4At1g68850peroxidase, putativeO.I.H.G.S.X.
0.6784.70.85Contig23267_atContig23267--5e+0At3g03830auxin-responsive protein, putativeO.I.H.G.S.X.
0.5066.90.87S0001100116E08F1_x_atS0001100116E08F1--1e+1At3g29639-O.I.H.G.S.X.
0.3849.50.85Contig17857_atContig17857--4e-5At3g02600LPP3 (LIPID PHOSPHATE PHOSPHATASE 3)O.I.H.G.S.X.
0.2326.10.88HB25K17r_atHB25K17r--2e+0At4g09260unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
16.199.6GSM431547pathogen isolates: Mock - rep2GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
9.899.1GSM382237Root_Control3GSE15295Mercury toxicity in barley rootsLink to GEO
9.499.0GSM382232Root_Hg1GSE15295Mercury toxicity in barley rootsLink to GEO
8.898.9GSM382234Root_Hg3GSE15295Mercury toxicity in barley rootsLink to GEO
7.498.5GSM311263kara_without_aphids_2GSE12584Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines Link to GEO
7.498.5GSM431569pathogen isolates: Mock inoculated control - rep2GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betaeLink to GEO
7.298.5GSM382233Root_Hg2GSE15295Mercury toxicity in barley rootsLink to GEO
6.398.1GSM431549pathogen isolates: Polymyxa graminis - rep1GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
4.897.0GSM382235Root_Control1GSE15295Mercury toxicity in barley rootsLink to GEO
4.897.0GSM382236Root_Control2GSE15295Mercury toxicity in barley rootsLink to GEO

Inter-species module comparison

A co-expression module including the soybean gene, Gma.13434.1.A1_at, orthologous to the query gene, Contig22190_s_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5678.2Gma.13434.1.A1_atAt4g27745--7e-1At1g45248-O.I.H.G.S.X.
0.6786.1Gma.857.1.S1_atAt4g27745--1e+0At5g55590QRT1 (QUARTET 1)O.I.H.G.S.X.
0.6786.1Gma.5447.2.S1_atAt4g27745--3e-33At4g33220enzyme inhibitor/ pectinesteraseO.I.H.G.S.X.
0.6483.4Gma.5447.1.S1_a_atAt4g27745--4e-21At3g43270pectinesterase family proteinO.I.H.G.S.X.
0.6483.4Gma.1871.1.S1_atAt4g27745--1e-8At4g19420pectinacetylesterase family proteinO.I.H.G.S.X.
0.5979.5GmaAffx.79849.1.S1_atAt4g27745--6e-2At4g12090cornichon family proteinO.I.H.G.S.X.
0.5576.3Gma.1871.2.S1_atAt4g27745--6e+0At4g19420pectinacetylesterase family proteinO.I.H.G.S.X.
0.5273.1GmaAffx.31210.1.S1_atAt4g27745--6e-1At4g00525unknown proteinO.I.H.G.S.X.
0.5071.7Gma.5269.1.S1_a_atAt4g27745isoflavone reductase homolog 1-7e-7At4g39230isoflavone reductase, putativeO.I.H.G.S.X.
0.4867.7Gma.987.1.S1_atAt4g27745--6e-1Atcg00070-O.I.H.G.S.X.
0.4057.1GmaAffx.80004.1.S1_atAt4g27745--4e-3At1g01250AP2 domain-containing transcription factor, putativeO.I.H.G.S.X.
0.3346.1GmaAffx.75503.1.S1_atAt4g27745--1e-16At1g75580auxin-responsive protein, putativeO.I.H.G.S.X.
0.3346.1Gma.357.1.A1_atAt4g27745--6e-1At3g16565ATP binding / alanine-tRNA ligase/ nucleic acid binding / nucleotide bindingO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage