Co-expression analysis

Gene ID Contig22190_s_at
Gene name
Homology with ArabidopsisSimilar to At4g27745: - (HF=4e-2)
Module size 6 genes
NF 0.53
%ile 73.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6077.30.87Contig22190_s_atContig22190--4e-2At4g27745-O.I.H.G.S.X.
0.8092.50.88Contig18641_atContig18641--5e-4At1g68850peroxidase, putativeO.I.H.G.S.X.
0.6784.70.85Contig23267_atContig23267--5e+0At3g03830auxin-responsive protein, putativeO.I.H.G.S.X.
0.5066.90.87S0001100116E08F1_x_atS0001100116E08F1--1e+1At3g29639-O.I.H.G.S.X.
0.3849.50.85Contig17857_atContig17857--4e-5At3g02600LPP3 (LIPID PHOSPHATE PHOSPHATASE 3)O.I.H.G.S.X.
0.2326.10.88HB25K17r_atHB25K17r--2e+0At4g09260unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
16.199.6GSM431547pathogen isolates: Mock - rep2GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
9.899.1GSM382237Root_Control3GSE15295Mercury toxicity in barley rootsLink to GEO
9.499.0GSM382232Root_Hg1GSE15295Mercury toxicity in barley rootsLink to GEO
8.898.9GSM382234Root_Hg3GSE15295Mercury toxicity in barley rootsLink to GEO
7.498.5GSM311263kara_without_aphids_2GSE12584Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines Link to GEO
7.498.5GSM431569pathogen isolates: Mock inoculated control - rep2GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betaeLink to GEO
7.298.5GSM382233Root_Hg2GSE15295Mercury toxicity in barley rootsLink to GEO
6.398.1GSM431549pathogen isolates: Polymyxa graminis - rep1GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
4.897.0GSM382235Root_Control1GSE15295Mercury toxicity in barley rootsLink to GEO
4.897.0GSM382236Root_Control2GSE15295Mercury toxicity in barley rootsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage