Co-expression analysis

Gene ID Contig2214_s_at
Gene name
Homology with ArabidopsisSimilar to At4g33730: pathogenesis-related protein, putative (HF=8e-2)
Module size 6 genes
NF 0.23
%ile 29.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.92Contig2214_s_atContig2214--8e-2At4g33730pathogenesis-related protein, putativeO.I.H.G.S.X.
0.5066.90.95HVSMEf0021O16r2_x_atHVSMEf0021O16r2--2e-1At3g27160GHS1 (GLUCOSE HYPERSENSITIVE 1)O.I.H.G.S.X.
0.4458.90.96Contig5356_s_atContig5356--9e-1At4g11870unknown proteinO.I.H.G.S.X.
0.3138.60.95Contig5354_atContig5354--4e-33At5g06140SNX1 (SORTING NEXIN 1)O.I.H.G.S.X.
0.1818.20.93Contig17307_atContig17307--1e+0At3g24050GATA transcription factor 1 (GATA-1)O.I.H.G.S.X.
0.097.40.94Contig888_atContig888--9e-16At3g26650GAPA (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.198.0GSM282036Malting_steeped_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
6.097.9GSM282031Malting_day1_Harrington_rep1GSE11200Expression data from malting barley seedsLink to GEO
5.897.8GSM16082319% SWC rep1GSE6990Barley drought stressLink to GEO
5.297.4GSM282037Malting_day1_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
5.097.2GSM1611487% SWC rep3GSE6990Barley drought stressLink to GEO
4.796.9GSM16082619% SWC rep3GSE6990Barley drought stressLink to GEO
3.795.5GSM16081938% SWC rep1GSE6990Barley drought stressLink to GEO
3.695.3GSM282026Malting_day1_Legacy_rep4GSE11200Expression data from malting barley seedsLink to GEO
3.595.1GSM261034Dicktoo-chilling-rep2GSE10329Low temperature stress in cv. DicktooLink to GEO
3.494.8GSM282034Malting_steeped_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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