Co-expression analysis

Gene ID Contig22133_at
Gene name
Homology with ArabidopsisSimilar to At5g48760: 60S ribosomal protein L13A (RPL13aD) (HF=6e+0)
Module size 6 genes
NF 0.40
%ile 54.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6784.70.95Contig22133_atContig22133--6e+0At5g4876060S ribosomal protein L13A (RPL13aD)O.I.H.G.S.X.
0.5572.00.96Contig14761_atContig14761--2e-1At5g64080protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinO.I.H.G.S.X.
0.5572.00.96Contig10615_atContig10615--2e+0At5g60840unknown proteinO.I.H.G.S.X.
0.5066.90.96Contig10818_atContig10818--1e-2At1g47970unknown proteinO.I.H.G.S.X.
0.3342.60.96HVSMEg0010L05r2_atHVSMEg0010L05r2--2e+0At2g45610hydrolaseO.I.H.G.S.X.
0.1615.30.96Contig8943_atContig8943--1e-6At1g7599026S proteasome regulatory subunit S3, putative (RPN3)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.596.7GSM261022ABA-Control-rep2GSE10328ABA experimentLink to GEO
3.895.7GSM16082238% SWC rep3GSE6990Barley drought stressLink to GEO
3.494.8GSM1611487% SWC rep3GSE6990Barley drought stressLink to GEO
3.294.3GSM16081938% SWC rep1GSE6990Barley drought stressLink to GEO
3.093.8GSM238409Pericarp 4DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.093.8GSM238408Pericarp 4DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.993.4GSM261021ABA-Control-rep1GSE10328ABA experimentLink to GEO
2.893.1GSM16082319% SWC rep1GSE6990Barley drought stressLink to GEO
2.893.1GSM261060Xantha b-12 Hardened rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
2.792.7GSM16082619% SWC rep3GSE6990Barley drought stressLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage