Co-expression analysis

Gene ID	Contig22133_at
Gene name
Homology with Arabidopsis	Similar to At5g48760: 60S ribosomal protein L13A (RPL13aD) (HF=6e+0)
Module size	6 genes
NF	0.40
%ile	54.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	84.7	0.95	Contig22133_at	Contig22133	-	-	6e+0	At5g48760	60S ribosomal protein L13A (RPL13aD)	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.96	Contig14761_at	Contig14761	-	-	2e-1	At5g64080	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.96	Contig10615_at	Contig10615	-	-	2e+0	At5g60840	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.96	Contig10818_at	Contig10818	-	-	1e-2	At1g47970	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.96	HVSMEg0010L05r2_at	HVSMEg0010L05r2	-	-	2e+0	At2g45610	hydrolase	O.I.	H.G.	S.X.	Please select
0.16	15.3	0.96	Contig8943_at	Contig8943	-	-	1e-6	At1g75990	26S proteasome regulatory subunit S3, putative (RPN3)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.5	96.7	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment
3.8	95.7	GSM160822	38% SWC rep3	GSE6990	Barley drought stress
3.4	94.8	GSM161148	7% SWC rep3	GSE6990	Barley drought stress
3.2	94.3	GSM160819	38% SWC rep1	GSE6990	Barley drought stress
3.0	93.8	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.0	93.8	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.9	93.4	GSM261021	ABA-Control-rep1	GSE10328	ABA experiment
2.8	93.1	GSM160823	19% SWC rep1	GSE6990	Barley drought stress
2.8	93.1	GSM261060	Xantha b-12 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.7	92.7	GSM160826	19% SWC rep3	GSE6990	Barley drought stress

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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