Co-expression analysis

Gene ID Contig2202_at
Gene name
Homology with ArabidopsisSimilar to At5g18410: PIR121 (HF=2e-10)
Module size 19 genes
NF 0.33
%ile 43.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7790.80.93Contig2202_atContig2202--2e-10At5g18410PIR121O.I.H.G.S.X.
0.5369.70.95Contig8565_atContig8565--7e-10At3g13224RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.5167.50.94Contig17534_atContig17534--1e-5At4g01040glycosyl hydrolase family 18 proteinO.I.H.G.S.X.
0.3950.50.95Contig721_s_atContig721--2e+0At4g19095unknown proteinO.I.H.G.S.X.
0.3747.90.95Contig8141_atContig8141--2e+0At5g07950unknown proteinO.I.H.G.S.X.
0.3647.10.95Contig7221_atContig7221--6e+0At5g47610zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.3342.60.96Contig20398_atContig20398--8e-3At2g42620MAX2 (MORE AXILLARY BRANCHES 2)O.I.H.G.S.X.
0.3240.30.95Contig15978_atContig15978--4e-1At2g18250ATCOAD (4-phosphopantetheine adenylyltransferase)O.I.H.G.S.X.
0.3240.30.94Contig5645_atContig5645--6e-1At1g20350ATTIM17-1O.I.H.G.S.X.
0.2935.50.95Contig6884_s_atContig6884--9e-5At4g34100protein binding / zinc ion bindingO.I.H.G.S.X.
0.2835.50.96Contig10647_atContig10647--2e-46At2g20930-O.I.H.G.S.X.
0.2630.40.95Contig12594_atContig12594--3e+0At5g11990proline-rich family proteinO.I.H.G.S.X.
0.2528.90.95Contig12140_atContig12140--4e+0At5g54440unknown proteinO.I.H.G.S.X.
0.2427.20.96Contig6890_atContig6890--4e+0At5g34581hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.2427.20.95Contig177_atContig177--3e-93At5g17310UTP--glucose-1-phosphate uridylyltransferase, putative / UDP-glucose pyrophosphorylase, putative / UGPase, putativeO.I.H.G.S.X.
0.2224.20.96Contig12918_atContig12918--3e+1At5g02280synbindin, putativeO.I.H.G.S.X.
0.2122.60.96Contig10032_atContig10032--7e-3At5g09850transcription elongation factor-relatedO.I.H.G.S.X.
0.1919.60.95Contig19982_atContig19982--1e-4At2g18400ribosomal protein L6 family proteinO.I.H.G.S.X.
0.1716.90.95Contig10218_atContig10218--2e+0At2g44820unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.096.0GSM146364Maythorpe Root Control, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
3.995.8GSM146358Golden Promise Root Control, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
3.595.1GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.595.1GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.494.8GSM146367Maythorpe Root Salt, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
3.093.8GSM146361Golden Promise Root Salt, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
3.093.8GSM146362Golden Promise Root Salt, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
2.993.4GSM146368Maythorpe Root Salt, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
2.792.7GSM382233Root_Hg2GSE15295Mercury toxicity in barley rootsLink to GEO
2.792.7GSM238408Pericarp 4DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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