Co-expression analysis

Gene ID	Contig21980_at
Gene name
Homology with Arabidopsis	Similar to At3g24450: copper-binding family protein (HF=1e-1)
Module size	13 genes
NF	0.61
%ile	83.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.75	89.5	0.89	Contig21980_at	Contig21980	-	-	1e-1	At3g24450	copper-binding family protein	O.I.	H.G.	S.X.	Please select
0.78	91.2	0.87	HM04O07u_at	HM04O07u	-	-	1e+1	At4g13520	SMAP1 (SMALL ACIDIC PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.72	87.4	0.91	Contig7450_at	Contig7450	-	-	7e+0	At3g21055	PSBTN (photosystem II subunit T)	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.90	Contig7448_s_at	Contig7448	-	-	1e-1	At1g78340	ATGSTU22 (GLUTATHIONE S-TRANSFERASE TAU 22)	O.I.	H.G.	S.X.	Please select
0.64	80.9	0.90	Contig16930_at	Contig16930	-	-	1e+0	At3g20430	unknown protein	O.I.	H.G.	S.X.	Please select
0.64	80.9	0.88	HB20B10r_at	HB20B10r	-	-	8e+0	At5g13410	immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein	O.I.	H.G.	S.X.	Please select
0.63	80.3	0.89	HM02K20r_at	HM02K20r	-	-	3e+0	At4g20290	unknown protein	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.87	Contig8500_s_at	Contig8500	-	-	7e-1	At2g29290	tropinone reductase, putative / tropine dehydrogenase, putative	O.I.	H.G.	S.X.	Please select
0.58	74.9	0.88	Contig19293_at	Contig19293	-	-	5e-1	At1g19960	-	O.I.	H.G.	S.X.	Please select
0.56	74.3	0.89	Contig14554_at	Contig14554	-	-	7e+0	At5g06240	emb2735 (embryo defective 2735)	O.I.	H.G.	S.X.	Please select
0.52	68.3	0.91	HW03J01T_at	HW03J01T	-	-	3e-1	At1g78130	UNE2 (unfertilized embryo sac 2)	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.89	Contig21939_at	Contig21939	-	-	5e+0	At5g17523	-	O.I.	H.G.	S.X.	Please select
0.42	55.2	0.89	Contig18897_at	Contig18897	-	-	1e-8	At5g46390	peptidase S41 family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.5	98.2	GSM215730	Control (DMSO) treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
6.3	98.1	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
6.1	98.0	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
5.6	97.7	GSM215731	gibberellin treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
5.3	97.4	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
5.2	97.4	GSM431549	pathogen isolates: Polymyxa graminis - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.5	96.7	GSM215727	Control (DMSO) treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
4.5	96.7	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.4	96.6	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.8	95.7	GSM431548	pathogen isolates: Mock - rep3	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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