Co-expression analysis

Gene ID	Contig21929_at
Gene name
Homology with Arabidopsis	Similar to At3g57040: ARR9 (RESPONSE REGULATOR 9) (HF=3e-1)
Module size	18 genes
NF	0.21
%ile	26.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.70	86.0	0.84	Contig21929_at	Contig21929	-	-	3e-1	At3g57040	ARR9 (RESPONSE REGULATOR 9)	O.I.	H.G.	S.X.	Please select
0.54	70.3	0.89	HU08B18u_at	HU08B18u	-	-	1e+0	Atmg00690	-	O.I.	H.G.	S.X.	Please select
0.39	50.5	0.91	Contig17733_at	Contig17733	-	-	4e-1	At3g02750	protein phosphatase 2C family protein / PP2C family protein	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.92	Contig4560_at	Contig4560	-	-	2e-1	At1g29000	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.89	Contig18942_at	Contig18942	-	-	5e-1	At2g18530	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.89	Contig8930_s_at	Contig8930	-	-	7e-1	At1g30040	ATGA2OX2 (GIBBERELLIN 2-OXIDASE)	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.94	Contig9311_at	Contig9311	-	-	5e+0	At5g01880	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.91	Contig10949_at	Contig10949	-	-	4e-6	At1g65730	YSL7 (YELLOW STRIPE LIKE 7)	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.93	Contig15180_at	Contig15180	-	-	2e-1	At1g57690	F-box family protein	O.I.	H.G.	S.X.	Please select
0.18	18.2	0.91	Contig7254_at	Contig7254	-	-	6e+0	At2g17880	DNAJ heat shock protein, putative	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.91	Contig8480_at	Contig8480	-	-	1e-21	At5g03540	ATEXO70A1 (exocyst subunit EXO70 family protein A1)	O.I.	H.G.	S.X.	Please select
0.16	15.3	0.90	Contig1695_at	Contig1695	-	-	7e-21	At5g46430	60S ribosomal protein L32 (RPL32B)	O.I.	H.G.	S.X.	Please select
0.16	15.3	0.92	Contig5426_at	Contig5426	-	-	1e-1	At3g47160	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.14	12.9	0.90	Contig5428_s_at	Contig5428	-	-	2e-9	At2g20900	diacylglycerol kinase, putative	O.I.	H.G.	S.X.	Please select
0.14	12.9	0.91	Contig16906_at	Contig16906	-	-	9e-5	At5g04710	aspartyl aminopeptidase, putative	O.I.	H.G.	S.X.	Please select
0.13	11.6	0.91	Contig1298_at	Contig1298	-	-	6e-51	At2g36530	LOS2	O.I.	H.G.	S.X.	Please select
0.12	10.4	0.90	Contig26520_at	Contig26520	-	-	5e+0	At5g26610	D111/G-patch domain-containing protein	O.I.	H.G.	S.X.	Please select
0.07	5.8	0.89	Contig24465_at	Contig24465	-	-	3e+0	At5g42700	transcriptional factor B3 family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.7	99.0	GSM382237	Root_Control3	GSE15295	Mercury toxicity in barley roots
6.4	98.1	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots
6.3	98.1	GSM382235	Root_Control1	GSE15295	Mercury toxicity in barley roots
4.8	97.0	GSM382232	Root_Hg1	GSE15295	Mercury toxicity in barley roots
3.7	95.5	GSM238433	Embryo 0 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.2	94.3	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.9	93.4	GSM282028	Malting_day1_Merit_rep1	GSE11200	Expression data from malting barley seeds
2.9	93.4	GSM282032	Malting_day1_Morex_rep1	GSE11200	Expression data from malting barley seeds
2.7	92.7	GSM419976	Palea_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
2.7	92.7	GSM440964	Control palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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