Co-expression analysis

Gene ID	Contig21916_at
Gene name
Homology with Arabidopsis	Similar to At2g42760: unknown protein (HF=4e-1)
Module size	6 genes
NF	0.58
%ile	79.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.56	74.3	0.88	Contig21916_at	Contig21916	-	-	4e-1	At2g42760	unknown protein	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.87	Contig23768_at	Contig23768	-	-	1e+0	At1g17780	unknown protein	O.I.	H.G.	S.X.	Please select
0.57	74.9	0.86	HI07A17r_at	HI07A17r	-	-	3e-1	At5g41160	ATPUP12	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.87	EBpi01_SQ002_B23_at	EBpi01_SQ002_B23	-	-	4e+0	At2g13960	myb family transcription factor	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.88	Contig13653_at	Contig13653	-	-	4e+0	At4g18080	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.89	Contig19065_at	Contig19065	-	-	1e+0	At5g58787	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.0	97.9	GSM431570	pathogen isolates: Mock inoculated control - rep3	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
5.9	97.9	GSM431568	pathogen isolates: Mock inoculated control - rep1	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
5.6	97.7	GSM431571	pathogen isolates: Polymyxa betae - rep1	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
4.8	97.0	GSM238439	Embryo 72 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.4	96.6	GSM431569	pathogen isolates: Mock inoculated control - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
4.3	96.4	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.3	96.4	GSM431550	pathogen isolates: Polymyxa graminis - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.2	96.3	GSM431547	pathogen isolates: Mock - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.2	96.3	GSM431551	pathogen isolates: Polymyxa graminis - rep3	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
3.9	95.8	GSM238438	Embryo 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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