Co-expression analysis

Gene ID	Contig21865_at
Gene name
Homology with Arabidopsis	Similar to At5g45870: Bet v I allergen family protein (HF=9e-1)
Module size	6 genes
NF	0.40
%ile	55.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	77.3	0.92	Contig21865_at	Contig21865	-	-	9e-1	At5g45870	Bet v I allergen family protein	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.94	Contig14949_at	Contig14949	-	-	3e-2	At3g19100	calcium-dependent protein kinase, putative / CDPK, putative	O.I.	H.G.	S.X.	Please select
0.57	74.9	0.93	Contig13428_at	Contig13428	-	-	6e-5	At3g17160	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.92	Contig13965_at	Contig13965	-	-	7e+0	At5g55056	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.90	Contig26369_at	Contig26369	-	-	4e+0	At4g02620	vacuolar ATPase subunit F family protein	O.I.	H.G.	S.X.	Please select
0.11	9.4	0.92	Contig9996_at	Contig9996	-	-	1e+0	At3g18460	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.3	99.3	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
7.3	98.5	GSM238433	Embryo 0 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.7	98.3	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.8	97.8	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.5	96.7	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.3	96.4	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
4.3	96.4	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.1	96.2	GSM373008	genotype: 11542 - pathogen isolates: K1 - time: 32 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.7	95.5	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.5	95.1	GSM372991	genotype: 11542 - pathogen isolates: 5874 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage