Co-expression analysis

Gene ID Contig21705_at
Gene name
Homology with ArabidopsisSimilar to At5g51780: basix helix-loop-helix (bHLH) family protein (HF=1e+1)
Module size 6 genes
NF 0.26
%ile 32.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6178.70.89Contig21705_atContig21705--1e+1At5g51780basix helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.5066.90.89HV_CEb0021I03r2_atHV_CEb0021I03r2--2e-1At5g42720glycosyl hydrolase family 17 proteinO.I.H.G.S.X.
0.4458.90.89HV_CEb0005M21r2_s_atHV_CEb0005M21r2--3e+0At1g15800unknown proteinO.I.H.G.S.X.
0.3545.10.88HW09L19u_atHW09L19u--3e+0At5g38890exoribonuclease-relatedO.I.H.G.S.X.
0.1311.60.88HW04N20u_atHW04N20u--2e-1At3g58230unknown proteinO.I.H.G.S.X.
0.108.40.89Contig12739_atContig12739--1e+0At5g58480glycosyl hydrolase family 17 proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.897.8GSM372963genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep2GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
5.097.2GSM238408Pericarp 4DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.897.0GSM382234Root_Hg3GSE15295Mercury toxicity in barley rootsLink to GEO
4.396.4GSM372964genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep3GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
4.096.0GSM16081938% SWC rep1GSE6990Barley drought stressLink to GEO
4.096.0GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.795.5GSM238417Endosperm 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.795.5GSM372998genotype: 11542 - pathogen isolates: K1 - time: 16 - rep1GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
3.194.1GSM419977Palea_Rep3GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
3.194.1GSM440965Control palea_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage