Co-expression analysis

Gene ID	Contig21697_at
Gene name
Homology with Arabidopsis	Similar to At4g35980: unknown protein (HF=1e+0)
Module size	6 genes
NF	0.49
%ile	68.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	90.8	0.94	Contig21697_at	Contig21697	-	-	1e+0	At4g35980	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.94	Contig9625_at	Contig9625	-	-	1e-14	At2g45440	DHDPS2 (DIHYDRODIPICOLINATE SYNTHASE)	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.94	Contig1808_at	Contig1808	-	-	8e-8	At5g24300	SSI1 (SUPPRESSOR OF SALICYLIC ACID INSENSITIVITY 1)	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.95	Contig12144_s_at	Contig12144	-	-	1e+0	At5g04440	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.95	Contig11660_at	Contig11660	-	-	2e-5	At5g20170	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.92	Contig14520_at	Contig14520	-	-	6e+0	At5g01230	FtsJ-like methyltransferase family protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.7	99.4	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
10.7	99.2	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.4	97.5	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.1	97.3	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.8	97.0	GSM215731	gibberellin treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
4.3	96.4	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.2	96.3	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.2	96.3	GSM440966	Stressed palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
4.1	96.2	GSM261071	Albina f-17 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.0	96.0	GSM440968	Stressed palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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