Co-expression analysis

Gene ID	Contig21640_at
Gene name
Homology with Arabidopsis	Similar to At1g78340: ATGSTU22 (GLUTATHIONE S-TRANSFERASE TAU 22) (HF=5e-1)
Module size	6 genes
NF	0.12
%ile	14.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	94.0	0.89	Contig21640_at	Contig21640	-	-	5e-1	At1g78340	ATGSTU22 (GLUTATHIONE S-TRANSFERASE TAU 22)	O.I.	H.G.	S.X.	Please select
0.39	50.5	0.89	HM02O03r_at	HM02O03r	-	-	6e-2	At3g60540	sec61beta family protein	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.92	HA10D10u_x_at	HA10D10u	-	-	3e+0	At3g20220	auxin-responsive protein, putative	O.I.	H.G.	S.X.	Please select
0.08	6.5	0.92	HV09A09u_s_at	HV09A09u	-	-	4e-21	At1g69410	ELF5A-3 (EUKARYOTIC ELONGATION FACTOR 5A-3)	O.I.	H.G.	S.X.	Please select
0.04	3.4	0.93	HVSMEl0002M03r2_at	HVSMEl0002M03r2	-	-	4e+1	At5g55630	ATKCO1	O.I.	H.G.	S.X.	Please select
0.04	3.4	0.93	HVSMEm0001D23r2_at	HVSMEm0001D23r2	-	-	1e+0	At3g27416	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.8	98.6	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.4	98.1	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.2	97.4	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.4	96.6	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
3.6	95.3	GSM261040	Dicktoo-deacclimation-rep2	GSE10329	Low temperature stress in cv. Dicktoo
3.3	94.6	GSM372953	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.3	94.6	GSM372954	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.2	94.3	GSM398250	Martin_0d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.2	94.3	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
3.1	94.1	GSM372955	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage