Co-expression analysis

Gene ID Contig2163_at
Gene name
Homology with ArabidopsisSimilar to At2g04046: - (HF=3e-1)
Module size 10 genes
NF 0.52
%ile 73.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5369.70.89Contig2163_atContig2163--3e-1At2g04046-O.I.H.G.S.X.
0.8293.10.93Contig18430_atContig18430--2e-2At1g18340basal transcription factor complex subunit-relatedO.I.H.G.S.X.
0.6380.30.94Contig3565_s_atContig3565--2e-1At4g01430nodulin MtN21 family proteinO.I.H.G.S.X.
0.6380.30.94HO11K23S_s_atHO11K23S--4e+0At3g17420GPK1O.I.H.G.S.X.
0.5572.00.93Contig7635_s_atContig7635--3e-1At5g42630ATS (ABERRANT TESTA SHAPE)O.I.H.G.S.X.
0.5572.00.94Contig13565_atContig13565--9e+0At4g29770-O.I.H.G.S.X.
0.5369.70.94Contig20065_atContig20065--4e-1At4g11600ATGPX6 (GLUTATHIONE PEROXIDASE 6)O.I.H.G.S.X.
0.5066.90.93HP01O07w_atHP01O07w--3e+0At5g16490RIC4 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 4)O.I.H.G.S.X.
0.4053.10.93Contig9578_s_atContig9578--9e-13At5g64030dehydration-responsive protein-relatedO.I.H.G.S.X.
0.2630.40.92Contig5976_s_atContig5976--4e-58At4g39520GTP-binding protein, putativeO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.297.4GSM146365Maythorpe Root Control, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
4.796.9GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
4.696.8GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.895.7GSM146368Maythorpe Root Salt, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
3.595.1GSM146362Golden Promise Root Salt, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
3.494.8GSM146359Golden Promise Root Control, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
3.194.1GSM261027ABA-Late-rep1GSE10328ABA experimentLink to GEO
3.194.1GSM261022ABA-Control-rep2GSE10328ABA experimentLink to GEO
2.893.1GSM238434Embryo 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.692.3GSM282036Malting_steeped_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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