Co-expression analysis

Gene ID	Contig21628_at
Gene name
Homology with Arabidopsis	Similar to At4g25870: unknown protein (HF=1e+0)
Module size	6 genes
NF	0.41
%ile	56.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.88	Contig21628_at	Contig21628	-	-	1e+0	At4g25870	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.90	Contig19960_s_at	Contig19960	ENOD40-like protein	-	2e-1	At1g75980	-	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.90	Contig10306_s_at	Contig10306	-	-	6e+0	At5g03310	auxin-responsive family protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.92	Contig10484_at	Contig10484	-	-	6e-10	At3g24650	ABI3 (ABA INSENSITIVE 3)	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.90	HV_CEb0001H12r2_at	HV_CEb0001H12r2	-	-	4e+0	At5g16740	amino acid transporter family protein	O.I.	H.G.	S.X.	Please select
0.15	14.1	0.90	Contig19483_at	Contig19483	-	-	8e-39	At1g07170	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.6	99.5	GSM419973	Lemma_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
13.6	99.5	GSM440958	Control lemma_Rep2	GSE17669	Gene expression in the barley spike during drought stress
8.2	98.7	GSM215731	gibberellin treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
8.2	98.7	GSM215728	gibberellin treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
7.5	98.6	GSM261060	Xantha b-12 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.0	98.4	GSM215727	Control (DMSO) treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
6.8	98.3	GSM261059	Xantha b-12 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.6	98.2	GSM261078	Albina e-16 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.5	98.2	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.5	98.2	GSM261065	Xantha s-46 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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