Co-expression analysis

Gene ID	Contig2160_at
Gene name
Homology with Arabidopsis	Similar to At4g38920: ATVHA-C3 (VACUOLAR-TYPE H(+)-ATPASE C3) (HF=2e-34)
Module size	6 genes
NF	0.84
%ile	98.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.98	Contig2160_at	Contig2160	-	-	2e-34	At4g38920	ATVHA-C3 (VACUOLAR-TYPE H(+)-ATPASE C3)	O.I.	H.G.	S.X.	Please select
0.91	98.1	0.98	Contig21607_at	Contig21607	-	-	2e+1	At5g50710	unknown protein	O.I.	H.G.	S.X.	Please select
0.83	94.0	0.98	Contig23108_at	Contig23108	-	-	8e-1	At3g16280	DNA binding / transcription factor	O.I.	H.G.	S.X.	Please select
0.71	87.1	0.98	Contig3198_at	Contig3198	-	-	6e+0	At5g25940	early nodulin-related	O.I.	H.G.	S.X.	Please select
0.71	87.1	0.99	Contig3147_at	Contig3147	-	-	3e-4	At1g09940	HEMA2	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.98	Contig18000_at	Contig18000	knotted 1	-	1e-33	At1g62360	STM (SHOOT MERISTEMLESS)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.9	98.7	GSM440979	Stressed seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
7.9	98.7	GSM419982	Seed_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
7.9	98.7	GSM440976	Control seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
7.5	98.6	GSM238419	Endosperm 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.2	98.0	GSM440980	Stressed seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
5.1	97.3	GSM238418	Endosperm 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.9	97.1	GSM238417	Endosperm 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.7	96.9	GSM238416	Endosperm 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.5	96.7	GSM419981	Seed_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
4.5	96.7	GSM440975	Control seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage