Co-expression analysis

Gene ID	Contig21533_at
Gene name
Homology with Arabidopsis	Similar to At1g24000: Bet v I allergen family protein (HF=2e+0)
Module size	21 genes
NF	0.73
%ile	93.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.86	94.8	0.96	Contig21533_at	Contig21533	-	-	2e+0	At1g24000	Bet v I allergen family protein	O.I.	H.G.	S.X.	Please select
0.85	94.5	0.96	Contig14886_at	Contig14886	-	-	1e+0	At3g07860	unknown protein	O.I.	H.G.	S.X.	Please select
0.84	94.3	0.96	HA06j10r_at	HA06j10r	-	-	2e+0	At4g21920	unknown protein	O.I.	H.G.	S.X.	Please select
0.84	94.3	0.96	HY02C19u_at	HY02C19u	-	-	5e+0	At4g15610	integral membrane family protein	O.I.	H.G.	S.X.	Please select
0.79	91.4	0.96	HY06F24u_x_at	HY06F24u	-	-	1e+1	At5g05710	pleckstrin homology (PH) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.77	90.8	0.96	9507414_R_4264-4644_at	9507414_R_4264-4644	-	-	1e+1	At5g06320	NHL3	O.I.	H.G.	S.X.	Please select
0.76	89.8	0.96	HW03P01u_at	HW03P01u	-	-	1e+1	At5g13190	-	O.I.	H.G.	S.X.	Please select
0.76	89.8	0.96	HA31G21r_at	HA31G21r	-	-	2e+0	At5g17190	unknown protein	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.96	Contig23039_at	Contig23039	-	-	4e-2	At2g45920	U-box domain-containing protein	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.96	Contig245_s_at	Contig245	-	-	2e+0	At4g16380	metal ion binding	O.I.	H.G.	S.X.	Please select
0.71	87.1	0.96	EBro02_SQ008_P15_at	EBro02_SQ008_P15	-	-	1e+1	At5g43211	unknown protein	O.I.	H.G.	S.X.	Please select
0.70	86.0	0.96	V00087.1_at	V00087.1	-	-	3e-1	At5g43525	-	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.96	EBro08_SQ001_H04_at	EBro08_SQ001_H04	-	-	1e+1	At5g23027	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.97	HV_CEa0014H05r2_at	HV_CEa0014H05r2	-	-	3e+0	At5g64850	unknown protein	O.I.	H.G.	S.X.	Please select
0.65	81.4	0.96	HVSMEg0002G01r2_x_at	HVSMEg0002G01r2	-	-	6e+0	At5g39360	EDL2 (EID1-like 2)	O.I.	H.G.	S.X.	Please select
0.65	81.4	0.97	Contig17900_at	Contig17900	-	-	6e+0	At4g05170	DNA binding / transcription factor	O.I.	H.G.	S.X.	Please select
0.63	80.3	0.96	HS05N06r_at	HS05N06r	-	-	9e-1	At1g79110	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.96	baal1j07_at	baal1j07	-	-	5e-15	At4g30800	40S ribosomal protein S11 (RPS11B)	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.97	EBem04_SQ003_H15_at	EBem04_SQ003_H15	-	-	3e+0	At5g33806	unknown protein	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.96	HVSMEh0084N15r2_s_at	HVSMEh0084N15r2	-	-	6e+0	At1g48510	cytochrome c oxidase assembly protein surfeit-related	O.I.	H.G.	S.X.	Please select
0.54	70.3	0.96	Contig10097_at	Contig10097	-	-	4e-1	At3g16450	jacalin lectin family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.6	98.2	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.2	96.3	GSM440962	Stressed lemma_Rep3	GSE17669	Gene expression in the barley spike during drought stress
4.1	96.2	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.1	96.2	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds
3.8	95.7	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.4	94.8	GSM282032	Malting_day1_Morex_rep1	GSE11200	Expression data from malting barley seeds
3.2	94.3	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.2	94.3	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.1	94.1	GSM440978	Stressed seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress
3.1	94.1	GSM419983	Seed_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage