Co-expression analysis

Gene ID	Contig2152_at
Gene name
Homology with Arabidopsis	Similar to At2g01760: ARR14 (ARABIDOPSIS RESPONSE REGULATOR 14) (HF=5e-6)
Module size	6 genes
NF	0.69
%ile	90.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	88.7	0.83	Contig2152_at	Contig2152	-	-	5e-6	At2g01760	ARR14 (ARABIDOPSIS RESPONSE REGULATOR 14)	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.90	HS07I12u_x_at	HS07I12u	-	-	3e+0	At3g15210	ERF4 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4)	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.90	HS07I12u_s_at	HS07I12u	-	-	3e+0	At3g15210	ERF4 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4)	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.95	Contig1075_at	Contig1075	-	-	7e+0	At4g36500	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.96	Contig10759_at	Contig10759	-	-	7e-1	At5g15150	ATHB-3 (ARABIDOPSIS THALIANA HOMEOBOX 3)	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.84	Contig13823_at	Contig13823	-	-	2e-4	At5g13170	SAG29 (SENESCENCE-ASSOCIATED PROTEIN 29)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
30.9	99.9	GSM261043	before 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
20.7	99.7	GSM261044	before 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
19.2	99.7	GSM261042	before 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
15.8	99.6	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
13.2	99.4	GSM215731	gibberellin treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
12.6	99.4	GSM215730	Control (DMSO) treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
11.0	99.2	GSM215728	gibberellin treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
9.2	99.0	GSM215727	Control (DMSO) treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
9.1	98.9	GSM238425	Endosperm 48 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
8.7	98.9	GSM238426	Endosperm 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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