CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig21517_at

Gene name
Homology with Arabidopsis Similar to At5g45300: BMY2 (BETA-AMYLASE 2) (HF=3e-8)

Module size 7 genes

NF 0.37

%ile 50.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.48 63.2 0.94 Contig21517_at Contig21517 - - 3e-8 At5g45300 BMY2 (BETA-AMYLASE 2) O.I. H.G. S.X.
0.50 66.9 0.95 Contig7346_at Contig7346 - - 5e-1 At4g36560 unknown protein O.I. H.G. S.X.
0.43 56.4 0.95 Contig15126_at Contig15126 - - 5e-2 At1g04590 - O.I. H.G. S.X.
0.41 53.9 0.95 Contig1035_at Contig1035 - - 6e-58 At4g02890 UBQ14 O.I. H.G. S.X.
0.27 32.1 0.96 Contig11674_at Contig11674 - - 3e-1 At5g49420 MADS-box protein (AGL84) O.I. H.G. S.X.
0.23 26.1 0.96 Contig19923_at Contig19923 - - 3e-1 At4g26950 unknown protein O.I. H.G. S.X.
0.22 24.2 0.95 Contig15382_at Contig15382 - - 7e+0 Atmg00550 - O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	77.3	0.94	Contig179_s_at	Contig179	-	-	4e+0	At5g65360	histone H3	O.I.	H.G.	S.X.
0.55	72.0	0.94	HV08D10u_at	HV08D10u	-	-	9e-1	At2g01818	zinc ion binding	O.I.	H.G.	S.X.
0.50	66.9	0.94	HVSMEm0003O07r2_at	HVSMEm0003O07r2	-	-	1e+0	At1g63600	protein kinase-related	O.I.	H.G.	S.X.
0.44	58.9	0.94	EBem05_SQ004_B02_at	EBem05_SQ004_B02	-	-	1e+0	At1g03250	unknown protein	O.I.	H.G.	S.X.
0.36	47.1	0.94	HU04L21u_at	HU04L21u	-	-	3e-1	At3g18035	HON4	O.I.	H.G.	S.X.
0.36	47.1	0.92	HI04I02u_at	HI04I02u	-	-	5e+0	At5g38480	GRF3 (GENERAL REGULATORY FACTOR 3)	O.I.	H.G.	S.X.
0.35	45.1	0.92	HU09L12u_at	HU09L12u	-	-	2e+0	At5g38970	BR6OX1 (BRASSINOSTEROID-6-OXIDASE 1)	O.I.	H.G.	S.X.
0.33	42.6	0.96	Contig14030_at	Contig14030	-	-	8e-13	At1g76880	trihelix DNA-binding protein, putative	O.I.	H.G.	S.X.
0.33	42.6	0.96	Contig23308_at	Contig23308	-	-	1e+0	At3g13820	F-box family protein	O.I.	H.G.	S.X.
0.33	42.6	0.93	Contig14591_at	Contig14591	-	-	5e+0	At4g00335	RHB1A	O.I.	H.G.	S.X.
0.31	38.6	0.94	rbags18a16_s_at	rbags18a16	-	-	3e+0	At1g12880	atnudt12 (Arabidopsis thaliana Nudix hydrolase homolog 12)	O.I.	H.G.	S.X.
0.31	38.6	0.95	Contig9691_at	Contig9691	-	-	6e-3	At4g36830	GNS1/SUR4 membrane family protein	O.I.	H.G.	S.X.
0.29	35.5	0.93	Contig1753_at	Contig1753	-	-	1e-12	At3g28900	60S ribosomal protein L34 (RPL34C)	O.I.	H.G.	S.X.
0.29	35.5	0.93	Contig24171_at	Contig24171	-	-	5e+0	At5g05120	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.
0.27	32.1	0.94	EBes01_SQ004_G11_at	EBes01_SQ004_G11	-	-	4e+0	At5g42960	unknown protein	O.I.	H.G.	S.X.
0.26	30.4	0.94	Contig13020_at	Contig13020	-	-	8e+0	At5g04386	unknown protein	O.I.	H.G.	S.X.
0.26	30.4	0.96	Contig19027_at	Contig19027	-	-	1e+0	At5g05290	ATEXPA2 (ARABIDOPSIS THALIANA EXPANSIN A2)	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.1 98.0 GSM382234 Root_Hg3 GSE15295 Mercury toxicity in barley roots
5.2 97.4 GSM238428 Embryo 16DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
4.8 97.0 GSM431546 pathogen isolates: Mock - rep1 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.7 96.9 GSM431549 pathogen isolates: Polymyxa graminis - rep1 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
3.8 95.7 GSM238429 Embryo 16DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
3.2 94.3 GSM238431 Embryo 25DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
3.2 94.3 GSM261025 ABA-Early-rep2 GSE10328 ABA experiment
2.9 93.4 GSM238430 Embryo 25DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
2.9 93.4 GSM261021 ABA-Control-rep1 GSE10328 ABA experiment
2.8 93.1 GSM431569 pathogen isolates: Mock inoculated control - rep2 GSE17240 Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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