CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig21517_at

Gene name
Homology with Arabidopsis Similar to At5g45300: BMY2 (BETA-AMYLASE 2) (HF=3e-8)

Module size 7 genes

NF 0.37

%ile 50.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.48 63.2 0.94 Contig21517_at Contig21517 - - 3e-8 At5g45300 BMY2 (BETA-AMYLASE 2) O.I. H.G. S.X.
0.50 66.9 0.95 Contig7346_at Contig7346 - - 5e-1 At4g36560 unknown protein O.I. H.G. S.X.
0.43 56.4 0.95 Contig15126_at Contig15126 - - 5e-2 At1g04590 - O.I. H.G. S.X.
0.41 53.9 0.95 Contig1035_at Contig1035 - - 6e-58 At4g02890 UBQ14 O.I. H.G. S.X.
0.27 32.1 0.96 Contig11674_at Contig11674 - - 3e-1 At5g49420 MADS-box protein (AGL84) O.I. H.G. S.X.
0.23 26.1 0.96 Contig19923_at Contig19923 - - 3e-1 At4g26950 unknown protein O.I. H.G. S.X.
0.22 24.2 0.95 Contig15382_at Contig15382 - - 7e+0 Atmg00550 - O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.1 98.0 GSM382234 Root_Hg3 GSE15295 Mercury toxicity in barley roots
5.2 97.4 GSM238428 Embryo 16DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
4.8 97.0 GSM431546 pathogen isolates: Mock - rep1 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.7 96.9 GSM431549 pathogen isolates: Polymyxa graminis - rep1 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
3.8 95.7 GSM238429 Embryo 16DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
3.2 94.3 GSM238431 Embryo 25DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
3.2 94.3 GSM261025 ABA-Early-rep2 GSE10328 ABA experiment
2.9 93.4 GSM238430 Embryo 25DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
2.9 93.4 GSM261021 ABA-Control-rep1 GSE10328 ABA experiment
2.8 93.1 GSM431569 pathogen isolates: Mock inoculated control - rep2 GSE17240 Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae

Inter-species module comparison

A co-expression module including the grape gene, 1614555_at, orthologous to the query gene, Contig21517_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.57 79.8 1614555_at At5g45300 hypothetical protein LOC100254478 - 2e-13 At5g45300 BMY2 (BETA-AMYLASE 2) O.I. H.G. S.X.
0.67 87.9 1619715_at At5g45300 hypothetical protein LOC100243011 - 5e-39 At1g30470 SIT4 phosphatase-associated family protein O.I. H.G. S.X.
0.64 84.7 1619013_at At5g45300 hypothetical protein LOC100242671 - 3e-32 At1g03260 - O.I. H.G. S.X.
0.60 81.9 1622731_at At5g45300 hypothetical protein LOC100257054 - 8e-12 At3g55070 - O.I. H.G. S.X.
0.54 75.7 1613905_at At5g45300 hypothetical protein LOC100254141 - 3e-13 At5g08160 ATPK3 O.I. H.G. S.X.
0.42 60.1 1613731_at At5g45300 hypothetical protein LOC100248748 - 2e-5 At5g63840 RSW3 (RADIAL SWELLING 3) O.I. H.G. S.X.
0.40 57.7 1612122_at At5g45300 hypothetical protein LOC100246317 /// hypothetical protein LOC100254873 - 1e-17 At3g13870 RHD3 (ROOT HAIR DEFECTIVE 3) O.I. H.G. S.X.
0.38 53.6 1615804_at At5g45300 - - 4e-2 At5g65910 BSD domain-containing protein O.I. H.G. S.X.
0.37 51.7 1618759_at At5g45300 hypothetical protein LOC100256813 - 1e+0 At1g76010 nucleic acid binding O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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