CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig21517_at

Gene name
Homology with Arabidopsis Similar to At5g45300: BMY2 (BETA-AMYLASE 2) (HF=3e-8)

Module size 7 genes

NF 0.37

%ile 50.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.48 63.2 0.94 Contig21517_at Contig21517 - - 3e-8 At5g45300 BMY2 (BETA-AMYLASE 2) O.I. H.G. S.X.
0.50 66.9 0.95 Contig7346_at Contig7346 - - 5e-1 At4g36560 unknown protein O.I. H.G. S.X.
0.43 56.4 0.95 Contig15126_at Contig15126 - - 5e-2 At1g04590 - O.I. H.G. S.X.
0.41 53.9 0.95 Contig1035_at Contig1035 - - 6e-58 At4g02890 UBQ14 O.I. H.G. S.X.
0.27 32.1 0.96 Contig11674_at Contig11674 - - 3e-1 At5g49420 MADS-box protein (AGL84) O.I. H.G. S.X.
0.23 26.1 0.96 Contig19923_at Contig19923 - - 3e-1 At4g26950 unknown protein O.I. H.G. S.X.
0.22 24.2 0.95 Contig15382_at Contig15382 - - 7e+0 Atmg00550 - O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.1 98.0 GSM382234 Root_Hg3 GSE15295 Mercury toxicity in barley roots
5.2 97.4 GSM238428 Embryo 16DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
4.8 97.0 GSM431546 pathogen isolates: Mock - rep1 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.7 96.9 GSM431549 pathogen isolates: Polymyxa graminis - rep1 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
3.8 95.7 GSM238429 Embryo 16DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
3.2 94.3 GSM238431 Embryo 25DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
3.2 94.3 GSM261025 ABA-Early-rep2 GSE10328 ABA experiment
2.9 93.4 GSM238430 Embryo 25DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
2.9 93.4 GSM261021 ABA-Control-rep1 GSE10328 ABA experiment
2.8 93.1 GSM431569 pathogen isolates: Mock inoculated control - rep2 GSE17240 Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae

Inter-species module comparison

A co-expression module including the rice gene, Os02g0129600, orthologous to the query gene, Contig21517_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.2 Os02g0129600 At5g45300 - Glycoside hydrolase, family 14 protein 2e-2 At2g45880 BAM7 (BETA-AMYLASE 7) O.I. H.G. S.X.
0.80 94.6 Os12g0190100 At5g45300 - Auxin-independent growth promoter-like protein 2e-20 At5g64600 unknown protein O.I. H.G. S.X.
0.57 77.0 Os01g0321800 At5g45300 - Hypothetical protein 3e-8 At3g62140 unknown protein O.I. H.G. S.X.
0.50 68.0 Os11g0236000 At5g45300 - Glycerophosphoryl diester phosphodiesterase familyprotein 5e-1 At4g26555 immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein O.I. H.G. S.X.
0.46 60.9 Os05g0387800 At5g45300 - GCN5-related N-acetyltransferase domain containingprotein 9e-1 At5g42905 nucleic acid binding / ribonuclease H O.I. H.G. S.X.
0.29 31.1 Os12g0109900 At5g45300 - Double-stranded RNA binding domain containingprotein 6e-2 At2g28380 DRB2 (DSRNA-BINDING PROTEIN 2) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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