Co-expression analysis

Gene ID Contig21517_at
Gene name
Homology with ArabidopsisSimilar to At5g45300: BMY2 (BETA-AMYLASE 2) (HF=3e-8)
Module size 7 genes
NF 0.37
%ile 50.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4863.20.94Contig21517_atContig21517--3e-8At5g45300BMY2 (BETA-AMYLASE 2)O.I.H.G.S.X.
0.5066.90.95Contig7346_atContig7346--5e-1At4g36560unknown proteinO.I.H.G.S.X.
0.4356.40.95Contig15126_atContig15126--5e-2At1g04590-O.I.H.G.S.X.
0.4153.90.95Contig1035_atContig1035--6e-58At4g02890UBQ14O.I.H.G.S.X.
0.2732.10.96Contig11674_atContig11674--3e-1At5g49420MADS-box protein (AGL84)O.I.H.G.S.X.
0.2326.10.96Contig19923_atContig19923--3e-1At4g26950unknown proteinO.I.H.G.S.X.
0.2224.20.95Contig15382_atContig15382--7e+0Atmg00550-O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.198.0GSM382234Root_Hg3GSE15295Mercury toxicity in barley rootsLink to GEO
5.297.4GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.897.0GSM431546pathogen isolates: Mock - rep1GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
4.796.9GSM431549pathogen isolates: Polymyxa graminis - rep1GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
3.895.7GSM238429Embryo 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.294.3GSM238431Embryo 25DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.294.3GSM261025ABA-Early-rep2GSE10328ABA experimentLink to GEO
2.993.4GSM238430Embryo 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.993.4GSM261021ABA-Control-rep1GSE10328ABA experimentLink to GEO
2.893.1GSM431569pathogen isolates: Mock inoculated control - rep2GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betaeLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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