Co-expression analysis

Gene ID	Contig21492_at
Gene name
Homology with Arabidopsis	Similar to At3g58190: LBD29 (LATERAL ORGAN BOUNDARIES-DOMAIN 29) (HF=4e+0)
Module size	26 genes
NF	0.32
%ile	42.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.94	98.9	0.87	Contig21492_at	Contig21492	-	-	4e+0	At3g58190	LBD29 (LATERAL ORGAN BOUNDARIES-DOMAIN 29)	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.87	Contig18001_at	Contig18001	-	-	8e-11	At1g48430	dihydroxyacetone kinase family protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.96	Contig6651_at	Contig6651	-	-	2e-3	At1g42480	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.94	Contig6602_at	Contig6602	core3ft protein	-	2e-10	At3g19280	FUT11 (FUCOSYLTRANSFERASE 11)	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.92	Contig7501_at	Contig7501	-	-	5e-2	At4g38810	calcium-binding EF hand family protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.92	Contig4942_at	Contig4942	-	-	7e-14	At5g51070	ERD1 (EARLY RESPONSIVE TO DEHYDRATION 1)	O.I.	H.G.	S.X.	Please select
0.37	47.9	0.96	EBpi01_SQ002_F17_s_at	EBpi01_SQ002_F17	-	-	7e-7	At5g59970	histone H4	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.91	Contig18557_at	Contig18557	-	-	5e+0	At5g01740	-	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.93	HW01E20u_x_at	HW01E20u	-	-	2e+0	At4g23882	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.93	Contig5761_s_at	Contig5761	-	-	2e+0	At5g20650	COPT5	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.94	Contig20404_at	Contig20404	-	-	4e+0	At3g14850	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.94	Contig3497_at	Contig3497	-	-	4e+0	At5g67190	AP2 domain-containing transcription factor, putative	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.93	Contig16101_at	Contig16101	-	-	7e-13	At3g06950	tRNA pseudouridine synthase family protein	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.95	Contig10500_at	Contig10500	-	-	5e+0	At4g18610	LSH9 (LIGHT SENSITIVE HYPOCOTYLS 9)	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.95	Contig3383_at	Contig3383	-	-	4e+0	At4g27250	dihydroflavonol 4-reductase family / dihydrokaempferol 4-reductase family	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.89	Contig18190_at	Contig18190	-	-	1e+0	At2g02390	ATGSTZ1 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE ZETA 1)	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.96	Contig13000_at	Contig13000	-	-	8e-58	At1g10950	endomembrane protein 70, putative	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.93	Contig19752_at	Contig19752	-	-	1e+0	At2g01340	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.93	Contig11540_at	Contig11540	-	-	3e+0	At3g44190	pyridine nucleotide-disulphide oxidoreductase family protein	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.90	Contig16172_at	Contig16172	-	-	2e+0	At3g12490	cysteine protease inhibitor, putative / cystatin, putative	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.95	Contig11310_at	Contig11310	-	-	5e-1	At2g04340	unknown protein	O.I.	H.G.	S.X.	Please select
0.24	27.2	0.95	Contig5793_at	Contig5793	-	-	1e-1	At5g23950	C2 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.88	Contig1469_x_at	Contig1469	-	-	1e+1	At5g50410	unknown protein	O.I.	H.G.	S.X.	Please select
0.18	18.2	0.91	Contig6594_at	Contig6594	-	-	2e-15	At2g03890	phosphatidylinositol 3- and 4-kinase family protein	O.I.	H.G.	S.X.	Please select
0.15	14.1	0.91	Contig18491_at	Contig18491	-	-	1e-2	At3g48425	endonuclease/exonuclease/phosphatase family protein	O.I.	H.G.	S.X.	Please select
0.11	9.4	0.90	Contig18856_at	Contig18856	-	-	2e-6	At5g04940	SUVH1 (SU(VAR)3-9 HOMOLOG 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.5	98.2	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.2	97.4	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.7	96.9	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.1	96.2	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.0	96.0	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.4	94.8	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.4	94.8	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.3	94.6	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.2	94.3	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.1	94.1	GSM419982	Seed_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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