CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig21454_x_at

Gene name
Homology with Arabidopsis Similar to At4g01265: raffinose synthase family protein / seed imbibition protein-related (HF=4e+0)

Module size 6 genes

NF 0.91

%ile 99.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.1 0.96 Contig21454_x_at Contig21454 - - 4e+0 At4g01265 raffinose synthase family protein / seed imbibition protein-related O.I. H.G. S.X.
0.91 98.1 0.95 Contig15145_at Contig15145 - - 1e-61 At3g09920 PIP5K9 (PHOSPHATIDYL INOSITOL MONOPHOSPHATE 5 KINASE) O.I. H.G. S.X.
0.91 98.1 0.96 HV_CEa0012H15r2_at HV_CEa0012H15r2 - - 4e+0 At1g11450 nodulin MtN21 family protein O.I. H.G. S.X.
0.91 98.1 0.96 Contig9426_at Contig9426 - - 2e-2 At5g51340 unknown protein O.I. H.G. S.X.
0.83 94.0 0.95 Contig23898_at Contig23898 - - 4e-1 At2g01610 invertase/pectin methylesterase inhibitor family protein O.I. H.G. S.X.
0.57 74.9 0.96 Contig21304_s_at Contig21304 - - 3e+0 At5g10390 histone H3 O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.1 99.3 GSM372984 genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
9.6 99.0 GSM372948 genotype: Mla6 - pathogen isolates: 5874 - time: 20 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.2 96.3 GSM372945 genotype: Mla6 - pathogen isolates: 5874 - time: 16 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.1 96.2 GSM238412 Endosperm 4DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
3.8 95.7 GSM372955 genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.6 95.3 GSM372966 genotype: Mla6 - pathogen isolates: K1 - time: 20 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.6 95.3 GSM261021 ABA-Control-rep1 GSE10328 ABA experiment
3.5 95.1 GSM161200 cold treatment rep1 GSE6993 Barley low temperature stress
3.4 94.8 GSM238410 Pericarp 8DAF; seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
3.4 94.8 GSM372967 genotype: Mla6 - pathogen isolates: K1 - time: 20 - rep3 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.31053.1.S1_at, orthologous to the query gene, Contig21454_x_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.2 TaAffx.31053.1.S1_at At4g01265 - - 2e-4 At4g24920 protein transport protein SEC61 gamma subunit, putative O.I. H.G. S.X.
0.40 58.4 TaAffx.79294.1.S1_at At4g01265 - - 5e-1 At4g12820 F-box family protein O.I. H.G. S.X.
0.33 46.9 TaAffx.118620.1.S1_at At4g01265 - - 1e+0 At2g31560 unknown protein O.I. H.G. S.X.
0.18 21.0 TaAffx.105451.1.S1_at At4g01265 - - 1e+0 At3g06730 thioredoxin family protein O.I. H.G. S.X.
0.13 14.6 TaAffx.110270.1.S1_at At4g01265 - - 4e+0 At4g02360 unknown protein O.I. H.G. S.X.
0.05 6.7 TaAffx.3664.1.S1_at At4g01265 - - 2e+0 At2g47710 universal stress protein (USP) family protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage