Co-expression analysis

Gene ID Contig2135_s_at
Gene name
Homology with ArabidopsisSimilar to At5g23660: MTN3 (Arabidopsis homolog of Medicago truncatula MTN3) (HF=4e-2)
Module size 10 genes
NF 0.44
%ile 61.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5975.80.96Contig2135_s_atContig2135--4e-2At5g23660MTN3 (Arabidopsis homolog of Medicago truncatula MTN3)O.I.H.G.S.X.
0.5674.30.96Contig8146_atContig8146--6e-30At1g79830GC5 (golgin candidate 5)O.I.H.G.S.X.
0.4762.20.96Contig18534_atContig18534--8e-1At2g33775RALFL19 (ralf-like 19)O.I.H.G.S.X.
0.4762.20.96Contig17424_atContig17424--6e-6At5g16060-O.I.H.G.S.X.
0.3950.50.96Contig11048_atContig11048--9e+0At5g51545LPA2 (low psii accumulation2)O.I.H.G.S.X.
0.3545.10.97Contig10064_atContig10064--2e+0At2g12465LCR50 (Low-molecular-weight cysteine-rich 50)O.I.H.G.S.X.
0.3545.10.96Contig9632_atContig9632--1e-1At1g78370ATGSTU20 (GLUTATHIONE S-TRANSFERASE TAU 20)O.I.H.G.S.X.
0.3342.60.97Contig1498_s_atContig1498--7e-12At4g2574040S ribosomal protein S10 (RPS10A)O.I.H.G.S.X.
0.3240.30.97Contig13002_atContig13002--2e-10At1g45150unknown proteinO.I.H.G.S.X.
0.3138.60.96Contig24555_atContig24555--1e+0At2g45070SEC61 BETAO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.498.5GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
7.298.5GSM238429Embryo 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.995.8GSM238434Embryo 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.595.1GSM238432Embryo 0 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.093.8GSM238433Embryo 0 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.893.1GSM238435Embryo 24 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.893.1GSM238414Endosperm 8DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.893.1GSM238408Pericarp 4DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.792.7GSM261022ABA-Control-rep2GSE10328ABA experimentLink to GEO
2.692.3GSM261021ABA-Control-rep1GSE10328ABA experimentLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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