Co-expression analysis

Gene ID	Contig2135_s_at
Gene name
Homology with Arabidopsis	Similar to At5g23660: MTN3 (Arabidopsis homolog of Medicago truncatula MTN3) (HF=4e-2)
Module size	10 genes
NF	0.44
%ile	61.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.59	75.8	0.96	Contig2135_s_at	Contig2135	-	-	4e-2	At5g23660	MTN3 (Arabidopsis homolog of Medicago truncatula MTN3)	O.I.	H.G.	S.X.	Please select
0.56	74.3	0.96	Contig8146_at	Contig8146	-	-	6e-30	At1g79830	GC5 (golgin candidate 5)	O.I.	H.G.	S.X.	Please select
0.47	62.2	0.96	Contig18534_at	Contig18534	-	-	8e-1	At2g33775	RALFL19 (ralf-like 19)	O.I.	H.G.	S.X.	Please select
0.47	62.2	0.96	Contig17424_at	Contig17424	-	-	6e-6	At5g16060	-	O.I.	H.G.	S.X.	Please select
0.39	50.5	0.96	Contig11048_at	Contig11048	-	-	9e+0	At5g51545	LPA2 (low psii accumulation2)	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.97	Contig10064_at	Contig10064	-	-	2e+0	At2g12465	LCR50 (Low-molecular-weight cysteine-rich 50)	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.96	Contig9632_at	Contig9632	-	-	1e-1	At1g78370	ATGSTU20 (GLUTATHIONE S-TRANSFERASE TAU 20)	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.97	Contig1498_s_at	Contig1498	-	-	7e-12	At4g25740	40S ribosomal protein S10 (RPS10A)	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.97	Contig13002_at	Contig13002	-	-	2e-10	At1g45150	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.96	Contig24555_at	Contig24555	-	-	1e+0	At2g45070	SEC61 BETA	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.4	98.5	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.2	98.5	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.9	95.8	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.5	95.1	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.0	93.8	GSM238433	Embryo 0 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.8	93.1	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.8	93.1	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.8	93.1	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.7	92.7	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment
2.6	92.3	GSM261021	ABA-Control-rep1	GSE10328	ABA experiment

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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