Co-expression analysis

Gene ID	Contig21277_at
Gene name
Homology with Arabidopsis	Similar to At1g26850: dehydration-responsive family protein (HF=8e-12)
Module size	6 genes
NF	0.62
%ile	84.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	92.5	0.97	Contig21277_at	Contig21277	-	-	8e-12	At1g26850	dehydration-responsive family protein	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.97	Contig8333_at	Contig8333	-	-	4e-2	At3g56510	TBP-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.97	Contig8242_at	Contig8242	-	-	1e+0	At5g11620	SWIM zinc finger family protein / mitogen-activated protein kinase kinase kinase (MAPKKK)-related	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.97	Contig5897_at	Contig5897	-	-	6e-1	At5g27810	sequence-specific DNA binding / transcription factor	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.97	Contig15453_s_at	Contig15453	-	-	7e+0	Atcg00050	-	O.I.	H.G.	S.X.	Please select
0.47	62.2	0.96	Contig6767_s_at	Contig6767	-	-	2e-11	At1g13640	phosphatidylinositol 3- and 4-kinase family protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.1	94.1	GSM372990	genotype: 11542 - pathogen isolates: 5874 - time: 32 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.0	93.8	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.0	93.8	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
2.9	93.4	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds
2.8	93.1	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.8	93.1	GSM213436	Barley seeds with P. aeruginosa PAO1 for 12hr	GSE8618	P. aeruginosa virulent factor to barley
2.8	93.1	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.7	92.7	GSM130800	control, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment
2.7	92.7	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
2.7	92.7	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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