Co-expression analysis

Gene ID Contig21201_at
Gene name
Homology with ArabidopsisSimilar to At4g33750: - (HF=1e+0)
Module size 31 genes
NF 0.26
%ile 33.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8694.80.92Contig21201_atContig21201--1e+0At4g33750-O.I.H.G.S.X.
0.4963.70.93S0000200001C12F1_atS0000200001C12F1--5e-1At1g47370Toll-Interleukin-Resistance (TIR) domain-containing proteinO.I.H.G.S.X.
0.3950.50.94HA05k01r_atHA05k01r--5e-1At1g29610-O.I.H.G.S.X.
0.3747.90.93Contig11645_atContig11645--2e-1At5g46730glycine-rich proteinO.I.H.G.S.X.
0.3545.10.95Contig5413_atContig5413--4e-34At3g23340ckl10 (Casein Kinase I-like 10)O.I.H.G.S.X.
0.3545.10.94Contig446_atContig446--1e-33At1g42970GAPB (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE B SUBUNIT)O.I.H.G.S.X.
0.3545.10.95HX12B17r_atHX12B17r--1e+0At2g34310unknown proteinO.I.H.G.S.X.
0.3545.10.94HA10D18u_atHA10D18u--2e-1At1g0110060S acidic ribosomal protein P1 (RPP1A)O.I.H.G.S.X.
0.3545.10.95Contig6192_atContig6192--6e+0Atmg00480-O.I.H.G.S.X.
0.3443.60.94Contig19681_atContig19681--1e-1At3g18990VRN1 (REDUCED VERNALIZATION RESPONSE 1)O.I.H.G.S.X.
0.3342.60.93Contig10968_atContig10968--4e-15At4g34460AGB1 (GTP BINDING PROTEIN BETA 1)O.I.H.G.S.X.
0.3342.60.94EBpi01_SQ003_C12_atEBpi01_SQ003_C12--5e-2At4g35260IDH1 (ISOCITRATE DEHYDROGENASE 1)O.I.H.G.S.X.
0.2835.50.95Contig13948_atContig13948--6e-10At1g14300bindingO.I.H.G.S.X.
0.2732.10.95Contig16296_atContig16296--6e+0At5g19510elongation factor 1B alpha-subunit 2 (eEF1Balpha2)O.I.H.G.S.X.
0.2630.40.93HVSMEg0017C12r2_atHVSMEg0017C12r2--1e+0At3g17300-O.I.H.G.S.X.
0.2326.10.95HVSMEk0017M22r2_atHVSMEk0017M22r2--1e+0At2g34440AGL29 (AGAMOUS-LIKE 29)O.I.H.G.S.X.
0.2326.10.96Contig23458_atContig23458--5e+0At5g48950thioesterase family proteinO.I.H.G.S.X.
0.2326.10.93Contig20079_atContig20079--2e+0At4g16141sequence-specific DNA binding / transcription factor/ zinc ion bindingO.I.H.G.S.X.
0.2224.20.95HU05N01u_atHU05N01u--1e+0At5g19830aminoacyl-tRNA hydrolaseO.I.H.G.S.X.
0.2224.20.93Contig23733_atContig23733--2e+0At1g69980unknown proteinO.I.H.G.S.X.
0.2122.60.95Contig21272_atContig21272--4e-7At2g42810PP5.2 (PROTEIN PHOSPHATASE 5.2)O.I.H.G.S.X.
0.2122.60.93HO11L24S_atHO11L24S--5e+0At5g18900oxidoreductase, 2OG-Fe(II) oxygenase family proteinO.I.H.G.S.X.
0.2122.60.95HT11K17u_atHT11K17u--2e-1At1g24590DRNL (DORNROSCHEN-LIKE)O.I.H.G.S.X.
0.2122.60.95Contig25915_atContig25915--3e-1At2g30560glycine-rich proteinO.I.H.G.S.X.
0.2021.10.94Contig26093_atContig26093--3e-1At1g70895CLE17 (CLAVATA3/ESR-RELATED 17)O.I.H.G.S.X.
0.2021.10.95EBca01_SQ004_P03_atEBca01_SQ004_P03--2e+0At1g06960small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putativeO.I.H.G.S.X.
0.1818.20.93Contig3065_x_atContig3065--1e+1At5g67190AP2 domain-containing transcription factor, putativeO.I.H.G.S.X.
0.1615.30.96HVSMEg0002G01r2_x_atHVSMEg0002G01r2--6e+0At5g39360EDL2 (EID1-like 2)O.I.H.G.S.X.
0.1615.30.96HS05N06r_atHS05N06r--9e-1At1g79110protein binding / zinc ion bindingO.I.H.G.S.X.
0.1412.90.95Contig17900_atContig17900--6e+0At4g05170DNA binding / transcription factorO.I.H.G.S.X.
0.086.50.93Contig7609_s_atContig7609--3e+0At2g38640unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.298.5GSM71140OWB-D stress replicate 2GSE3170 Barley single feature polymorphisms and drought stress gene expressionLink to GEO
6.898.3GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
6.398.1GSM238415Endosperm 8DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.597.6GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.795.5GSM71154Morex stress and unstress replicate 1GSE3170 Barley single feature polymorphisms and drought stress gene expressionLink to GEO
2.893.1GSM372964genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep3GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
2.792.7GSM282033Malting_day4_Harrington_rep4GSE11200Expression data from malting barley seedsLink to GEO
2.692.3GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.692.3GSM282038Malting_kilned_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO
2.692.3GSM282036Malting_steeped_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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