Co-expression analysis

Gene ID	Contig21185_at
Gene name
Homology with Arabidopsis	Similar to At3g24710: - (HF=4e-1)
Module size	6 genes
NF	0.57
%ile	79.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.94	Contig21185_at	Contig21185	-	-	4e-1	At3g24710	-	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.92	Contig21194_at	Contig21194	-	-	5e+0	At2g20940	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.95	Contig21235_at	Contig21235	-	-	5e-1	At1g74060	60S ribosomal protein L6 (RPL6B)	O.I.	H.G.	S.X.	Please select
0.57	74.9	0.91	Contig21124_at	Contig21124	-	-	4e+0	At5g05230	ubiquitin-protein ligase	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.92	Contig6578_at	Contig6578	-	-	1e-27	At1g64650	-	O.I.	H.G.	S.X.	Please select
0.37	47.9	0.93	HVSMEn0025K09r2_at	HVSMEn0025K09r2	-	-	8e-1	At2g21650	MEE3 (MATERNAL EFFECT EMBRYO ARREST 3)	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.2	98.5	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.9	97.9	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.6	96.8	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.5	96.7	GSM398261	HS41-1_0d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.4	96.6	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.3	96.4	GSM372959	genotype: Mla6 - pathogen isolates: K1 - time: 8 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.2	96.3	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
3.6	95.3	GSM398262	HS41-1_0d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.3	94.6	GSM261038	Dicktoo-subzero-rep3	GSE10329	Low temperature stress in cv. Dicktoo
3.3	94.6	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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