Co-expression analysis

Gene ID	Contig21168_at
Gene name
Homology with Arabidopsis	Similar to At2g39550: PGGT-I (HF=2e+0)
Module size	7 genes
NF	0.31
%ile	40.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.57	74.9	0.95	Contig21168_at	Contig21168	-	-	2e+0	At2g39550	PGGT-I	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.95	Contig8938_at	Contig8938	-	-	7e-9	At3g07300	eukaryotic translation initiation factor 2B family protein / eIF-2B family protein	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.95	Contig844_at	Contig844	-	-	2e+0	At1g11050	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.95	Contig20134_at	Contig20134	-	-	5e-1	At3g46760	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.96	Contig18385_at	Contig18385	-	-	2e+0	Atmg01170	-	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.95	Contig10279_at	Contig10279	-	-	3e+0	At1g52830	IAA6 (INDOLE-3-ACETIC ACID 6)	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.96	HVSMEc0019C19f_at	HVSMEc0019C19f	-	-	0	Atcg00020	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
23.2	99.8	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
23.2	99.8	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
10.0	99.1	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.7	96.9	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
4.6	96.8	GSM431550	pathogen isolates: Polymyxa graminis - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.6	96.8	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.5	96.7	GSM431547	pathogen isolates: Mock - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
3.9	95.8	GSM431548	pathogen isolates: Mock - rep3	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
3.6	95.3	GSM398263	HS41-1_0d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.6	95.3	GSM431549	pathogen isolates: Polymyxa graminis - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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