Co-expression analysis

Gene ID	Contig2112_at
Gene name
Homology with Arabidopsis	Similar to At1g44970: peroxidase, putative (HF=1e-8)
Module size	32 genes
NF	0.60
%ile	82.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.94	98.9	0.90	Contig2112_at	Contig2112	-	-	1e-8	At1g44970	peroxidase, putative	O.I.	H.G.	S.X.	Please select
0.79	91.4	0.91	Contig13565_at	Contig13565	-	-	9e+0	At4g29770	-	O.I.	H.G.	S.X.	Please select
0.76	89.8	0.90	Contig6207_at	Contig6207	-	-	1e-4	At2g47580	U1A (SPLICEOSOMAL PROTEIN U1A)	O.I.	H.G.	S.X.	Please select
0.75	89.5	0.91	Contig3565_s_at	Contig3565	-	-	2e-1	At4g01430	nodulin MtN21 family protein	O.I.	H.G.	S.X.	Please select
0.74	89.1	0.92	Contig6960_at	Contig6960	-	-	1e+0	At4g29770	-	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.89	Contig14747_at	Contig14747	-	-	2e-14	At3g09100	mRNA capping enzyme family protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.89	HV12H12u_at	HV12H12u	-	-	2e-45	At4g05050	UBQ11 (UBIQUITIN 11)	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.91	HV10P15u_at	HV10P15u	-	-	3e+0	At2g28725	unknown protein	O.I.	H.G.	S.X.	Please select
0.66	81.5	0.91	HO11K23S_s_at	HO11K23S	-	-	4e+0	At3g17420	GPK1	O.I.	H.G.	S.X.	Please select
0.66	81.5	0.92	HVSMEb0005H04r2_at	HVSMEb0005H04r2	-	-	2e+0	At3g44755	unknown protein	O.I.	H.G.	S.X.	Please select
0.65	81.4	0.91	Contig18738_at	Contig18738	-	-	4e+0	At5g11950	protein homodimerization	O.I.	H.G.	S.X.	Please select
0.64	80.9	0.93	Contig9578_s_at	Contig9578	-	-	9e-13	At5g64030	dehydration-responsive protein-related	O.I.	H.G.	S.X.	Please select
0.64	80.9	0.89	Mla12DH_orf_3pri12_at	Mla12DH_orf_3pri12	-	-	6e-1	At4g23620	50S ribosomal protein-related	O.I.	H.G.	S.X.	Please select
0.63	80.3	0.91	Contig20065_at	Contig20065	-	-	4e-1	At4g11600	ATGPX6 (GLUTATHIONE PEROXIDASE 6)	O.I.	H.G.	S.X.	Please select
0.62	79.1	0.89	Contig7226_at	Contig7226	-	-	2e-21	At3g54540	ATGCN4	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.89	Contig13695_at	Contig13695	-	-	2e-20	At1g02080	transcriptional regulator-related	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.89	Contig11779_at	Contig11779	-	-	4e-34	At2g14740	ATVSR3 (ARABIDOPSIS THALIANA VACULOLAR SORTING RECEPTOR 3)	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.90	Contig13694_at	Contig13694	-	-	6e-4	At1g19220	ARF19 (AUXIN RESPONSE FACTOR 19)	O.I.	H.G.	S.X.	Please select
0.59	75.8	0.91	Contig7635_s_at	Contig7635	-	-	3e-1	At5g42630	ATS (ABERRANT TESTA SHAPE)	O.I.	H.G.	S.X.	Please select
0.59	75.8	0.90	Contig6713_at	Contig6713	-	-	2e-1	At3g09350	armadillo/beta-catenin repeat family protein	O.I.	H.G.	S.X.	Please select
0.57	74.9	0.90	Contig7366_s_at	Contig7366	-	-	3e-1	At3g55450	protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.56	74.3	0.90	HO09D01S_at	HO09D01S	-	-	2e-1	Atmg00990	-	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.89	Contig18430_at	Contig18430	-	-	2e-2	At1g18340	basal transcription factor complex subunit-related	O.I.	H.G.	S.X.	Please select
0.54	70.3	0.89	Contig9239_s_at	Contig9239	-	-	3e-1	At4g00330	CRCK2	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.92	HVSMEb0005F19r2_at	HVSMEb0005F19r2	-	-	3e-1	At4g09010	APX4 (ASCORBATE PEROXIDASE 4)	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.91	Contig6014_at	Contig6014	-	-	5e+0	At5g38540	jacalin lectin family protein	O.I.	H.G.	S.X.	Please select
0.52	68.3	0.91	Contig17521_at	Contig17521	-	-	2e+0	At5g40930	TOM20-4 (TRANSLOCASE OF OUTER MEMBRANE 20-4)	O.I.	H.G.	S.X.	Please select
0.49	63.7	0.90	Contig590_at	Contig590	-	-	1e+0	At4g09840	unknown protein	O.I.	H.G.	S.X.	Please select
0.48	63.2	0.90	Contig67_at	Contig67	-	-	4e-40	At2g37600	60S ribosomal protein L36 (RPL36A)	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.89	HP01O07w_at	HP01O07w	-	-	3e+0	At5g16490	RIC4 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 4)	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.89	Contig3638_at	Contig3638	-	-	7e-9	At5g21090	leucine-rich repeat protein, putative	O.I.	H.G.	S.X.	Please select
0.41	53.9	0.89	Contig13634_at	Contig13634	-	-	1e+0	At4g33565	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.6	95.3	GSM372988	genotype: 11542 - pathogen isolates: 5874 - time: 24 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.6	95.3	GSM372984	genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.5	95.1	GSM372991	genotype: 11542 - pathogen isolates: 5874 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.5	95.1	GSM372985	genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.5	95.1	GSM372995	genotype: 11542 - pathogen isolates: K1 - time: 8 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.4	94.8	GSM372982	genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.4	94.8	GSM372986	genotype: 11542 - pathogen isolates: 5874 - time: 24 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.4	94.8	GSM372945	genotype: Mla6 - pathogen isolates: 5874 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.3	94.6	GSM373004	genotype: 11542 - pathogen isolates: K1 - time: 24 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.1	94.1	GSM372987	genotype: 11542 - pathogen isolates: 5874 - time: 24 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage