Co-expression analysis

Gene ID	Contig21103_at
Gene name
Homology with Arabidopsis	Similar to At3g07880: Rho GDP-dissociation inhibitor family protein (HF=1e+0)
Module size	12 genes
NF	0.58
%ile	80.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	78.7	0.81	Contig21103_at	Contig21103	-	-	1e+0	At3g07880	Rho GDP-dissociation inhibitor family protein	O.I.	H.G.	S.X.	Please select
0.80	92.5	0.85	Contig3986_s_at	Contig3986	-	-	6e-2	At4g13450	universal stress protein (USP) family protein	O.I.	H.G.	S.X.	Please select
0.75	89.5	0.85	HVSMEb0001K06r2_at	HVSMEb0001K06r2	-	-	8e-1	At5g58210	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.75	89.5	0.85	Contig9009_s_at	Contig9009	-	-	4e-1	At3g10116	unknown protein	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.83	Contig25049_at	Contig25049	-	-	2e+0	At1g20280	homeobox-leucine zipper protein-related	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.87	Contig4118_at	Contig4118	-	-	8e-4	At3g61610	aldose 1-epimerase family protein	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.87	Contig9975_at	Contig9975	-	-	1e+0	At1g27435	unknown protein	O.I.	H.G.	S.X.	Please select
0.51	67.5	0.86	Contig8340_at	Contig8340	-	-	8e-3	At2g41190	amino acid transporter family protein	O.I.	H.G.	S.X.	Please select
0.48	63.2	0.86	Contig10324_at	Contig10324	-	-	5e-33	At4g21800	QQT2 (quatre-quart2)	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.87	Contig10972_at	Contig10972	-	-	1e-5	At1g32500	ATNAP6 (NON-INTRINSIC ABC PROTEIN 6)	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.88	Contig11287_s_at	Contig11287	-	-	1e+0	At5g15960	KIN1	O.I.	H.G.	S.X.	Please select
0.39	50.5	0.87	Contig16253_at	Contig16253	-	-	7e+0	At5g48515	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.5	96.7	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
4.4	96.6	GSM215731	gibberellin treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
3.9	95.8	GSM440974	Stressed awn_Rep3	GSE17669	Gene expression in the barley spike during drought stress
3.7	95.5	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.5	95.1	GSM363461	Control (C) - rep2	GSE14521	Late response to boron toxicity in barley leaves
3.5	95.1	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.3	94.6	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.2	94.3	GSM440962	Stressed lemma_Rep3	GSE17669	Gene expression in the barley spike during drought stress
3.1	94.1	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
3.0	93.8	GSM261043	before 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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