CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig21078_at

Gene name
Homology with Arabidopsis Similar to At1g77765: unknown protein (HF=6e-1)

Module size 6 genes

NF 0.70

%ile 91.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.1 0.96 Contig21078_at Contig21078 - - 6e-1 At1g77765 unknown protein O.I. H.G. S.X.
0.73 88.7 0.93 Contig17872_at Contig17872 - - 2e+0 At3g24730 catalytic O.I. H.G. S.X.
0.67 84.7 0.91 Contig4495_x_at Contig4495 - - 1e+0 At5g12235 CLE22 (CLAVATA3/ESR-RELATED 22) O.I. H.G. S.X.
0.63 80.3 0.91 Contig4498_at Contig4498 - - 2e-1 At1g28290 AGP31 (arabinogalactan-protein 31) O.I. H.G. S.X.
0.61 78.7 0.95 Contig4499_s_at Contig4499 - - 4e-18 At4g22670 AtHip1 (Arabidopsis thaliana Hsp70-interacting protein 1) O.I. H.G. S.X.
0.47 62.2 0.91 Contig1403_at Contig1403 - - 1e-2 At3g26430 GDSL-motif lipase/hydrolase family protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.91	98.1	0.96	Contig21078_at	Contig21078	-	-	6e-1	At1g77765	unknown protein	O.I.	H.G.	S.X.
0.73	88.7	0.93	Contig17872_at	Contig17872	-	-	2e+0	At3g24730	catalytic	O.I.	H.G.	S.X.
0.67	84.7	0.91	Contig4495_x_at	Contig4495	-	-	1e+0	At5g12235	CLE22 (CLAVATA3/ESR-RELATED 22)	O.I.	H.G.	S.X.
0.63	80.3	0.91	Contig4498_at	Contig4498	-	-	2e-1	At1g28290	AGP31 (arabinogalactan-protein 31)	O.I.	H.G.	S.X.
0.61	78.7	0.95	Contig4499_s_at	Contig4499	-	-	4e-18	At4g22670	AtHip1 (Arabidopsis thaliana Hsp70-interacting protein 1)	O.I.	H.G.	S.X.
0.47	62.2	0.91	Contig1403_at	Contig1403	-	-	1e-2	At3g26430	GDSL-motif lipase/hydrolase family protein	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.92	98.4	0.89	Contig19426_at	Contig19426	-	-	2e-1	At3g27400	pectate lyase family protein	O.I.	H.G.	S.X.
0.71	87.1	0.90	Contig5026_at	Contig5026	-	-	3e-4	At1g51400	photosystem II 5 kD protein	O.I.	H.G.	S.X.
0.67	84.7	0.87	HU12N23u_s_at	HU12N23u	-	-	5e-1	At1g45145	ATTRX5	O.I.	H.G.	S.X.
0.67	84.7	0.89	Contig16284_at	Contig16284	-	-	2e-3	At1g36050	unknown protein	O.I.	H.G.	S.X.
0.67	84.7	0.90	Contig5940_s_at	Contig5940	-	-	9e-12	At1g65560	allyl alcohol dehydrogenase, putative	O.I.	H.G.	S.X.
0.67	84.7	0.91	Contig17873_at	Contig17873	-	-	4e-1	At4g17490	ATERF6 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 6)	O.I.	H.G.	S.X.
0.67	84.7	0.95	Contig9656_at	Contig9656	-	-	1e+0	At2g41225	unknown protein	O.I.	H.G.	S.X.
0.67	84.7	0.96	Contig4497_at	Contig4497	-	-	1e-2	At1g12410	CLP2 (CLP PROTEASE PROTEOLYTIC SUBUNIT 2)	O.I.	H.G.	S.X.
0.63	80.3	0.89	HT07E22u_x_at	HT07E22u	-	-	9e-1	At4g12850	far-red impaired responsive family protein / FAR1 family protein	O.I.	H.G.	S.X.
0.60	77.3	0.72	Contig6940_at	Contig6940	-	-	5e-1	At4g37450	AGP18 (ARABINOGALACTAN PROTEIN 18)	O.I.	H.G.	S.X.
0.60	77.3	0.89	Contig15100_at	Contig15100	-	-	3e+0	At5g67190	AP2 domain-containing transcription factor, putative	O.I.	H.G.	S.X.
0.60	77.3	0.94	Contig25193_at	Contig25193	-	-	1e+0	Atmg00450	-	O.I.	H.G.	S.X.
0.59	75.8	0.87	HS07I12u_s_at	HS07I12u	-	-	3e+0	At3g15210	ERF4 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4)	O.I.	H.G.	S.X.
0.57	74.9	0.80	EBro02_SQ005_I23_at	EBro02_SQ005_I23	-	-	4e+0	Atmg00890	-	O.I.	H.G.	S.X.
0.48	63.2	0.90	Contig4495_at	Contig4495	-	-	1e+0	At5g12235	CLE22 (CLAVATA3/ESR-RELATED 22)	O.I.	H.G.	S.X.
0.47	62.2	0.84	Contig1075_at	Contig1075	-	-	7e+0	At4g36500	unknown protein	O.I.	H.G.	S.X.
0.47	62.2	0.85	Contig10759_at	Contig10759	-	-	7e-1	At5g15150	ATHB-3 (ARABIDOPSIS THALIANA HOMEOBOX 3)	O.I.	H.G.	S.X.
0.44	58.9	0.90	Contig6939_at	Contig6939	-	-	2e-1	At5g16030	unknown protein	O.I.	H.G.	S.X.
0.42	55.2	0.86	Contig8207_at	Contig8207	-	-	2e-31	At2g22310	ATUBP4 (ARABIDOPSIS THALIANA UBIQUITIN-SPECIFIC PROTEASE 4)	O.I.	H.G.	S.X.
0.40	53.1	0.83	Contig2795_s_at	Contig2795	-	-	1e-23	At3g04830	binding	O.I.	H.G.	S.X.
0.39	50.5	0.85	Contig5436_at	Contig5436	-	-	6e-1	At1g44820	aminoacylase, putative / N-acyl-L-amino-acid amidohydrolase, putative	O.I.	H.G.	S.X.
0.38	49.5	0.85	Contig12336_at	Contig12336	-	-	8e-5	At3g22240	unknown protein	O.I.	H.G.	S.X.
0.36	47.1	0.87	Contig23984_at	Contig23984	-	-	1e+0	At3g57230	AGL16 (AGAMOUS-LIKE 16)	O.I.	H.G.	S.X.
0.36	47.1	0.91	Contig5555_at	Contig5555	-	-	1e-55	At1g80560	3-isopropylmalate dehydrogenase, chloroplast, putative	O.I.	H.G.	S.X.
0.33	42.6	0.77	Contig1671_s_at	Contig1671	-	-	1e+0	At5g20290	40S ribosomal protein S8 (RPS8A)	O.I.	H.G.	S.X.
0.33	42.6	0.87	HT05D14u_s_at	HT05D14u	-	-	2e+0	At3g21710	unknown protein	O.I.	H.G.	S.X.
0.31	38.6	0.86	Contig2795_at	Contig2795	-	-	1e-23	At3g04830	binding	O.I.	H.G.	S.X.
0.29	35.5	0.83	Contig8622_at	Contig8622	-	-	9e-1	At2g40085	unknown protein	O.I.	H.G.	S.X.
0.28	35.5	0.77	Contig13647_at	Contig13647	-	-	1e+0	At1g72310	ATL3	O.I.	H.G.	S.X.
0.28	35.5	0.83	Contig2265_at	Contig2265	-	-	4e-3	At1g72970	HTH (HOTHEAD)	O.I.	H.G.	S.X.
0.28	35.5	0.84	HD05F01r_at	HD05F01r	-	-	2e+1	Atcg00540	-	O.I.	H.G.	S.X.
0.27	32.1	0.76	Contig19844_at	Contig19844	-	-	9e-2	At1g34380	5'-3' exonuclease family protein	O.I.	H.G.	S.X.
0.27	32.1	0.83	Contig6011_at	Contig6011	-	-	4e-7	At3g62790	NADH-ubiquinone oxidoreductase-related	O.I.	H.G.	S.X.
0.26	30.4	0.75	Contig13907_at	Contig13907	-	-	2e+0	At4g34290	SWIB complex BAF60b domain-containing protein	O.I.	H.G.	S.X.
0.26	30.4	0.85	HVSMEl0023K24r2_at	HVSMEl0023K24r2	-	-	4e+0	At4g09647	-	O.I.	H.G.	S.X.
0.26	30.4	0.82	Contig5840_at	Contig5840	-	-	2e-2	At5g23570	SGS3 (SUPPRESSOR OF GENE SILENCING 3)	O.I.	H.G.	S.X.
0.25	28.9	0.78	Contig3670_at	Contig3670	-	-	2e+0	At1g05430	unknown protein	O.I.	H.G.	S.X.
0.25	28.9	0.81	EBem10_SQ002_I10_s_at	EBem10_SQ002_I10	m12 protein	-	8e+0	At3g59460	-	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
20.9 99.7 GSM215732 gibberellin plus Yariv-reagent treatment rep2 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
20.4 99.7 GSM215730 Control (DMSO) treatment rep2 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
17.1 99.6 GSM215731 gibberellin treatment rep2 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
16.9 99.6 GSM215727 Control (DMSO) treatment rep1 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
16.8 99.6 GSM215729 gibberellin plus Yariv-reagent treatment rep1 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
16.7 99.6 GSM215728 gibberellin treatment rep1 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
13.6 99.5 GSM238427 Endosperm 72 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
8.0 98.7 GSM238422 Endosperm 24 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
7.5 98.6 GSM238420 Endosperm 0 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
7.4 98.5 GSM238425 Endosperm 48 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
20.9	99.7	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
20.4	99.7	GSM215730	Control (DMSO) treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
17.1	99.6	GSM215731	gibberellin treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
16.9	99.6	GSM215727	Control (DMSO) treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
16.8	99.6	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
16.7	99.6	GSM215728	gibberellin treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
13.6	99.5	GSM238427	Endosperm 72 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
8.0	98.7	GSM238422	Endosperm 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.5	98.6	GSM238420	Endosperm 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.4	98.5	GSM238425	Endosperm 48 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

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Gene ID	Contig21078_at
Gene name
Homology with Arabidopsis	Similar to At1g77765: unknown protein (HF=6e-1)
Module size	6 genes
NF	0.70
%ile	91.2

Co-expression analysis

Gene ID Contig21078_at Gene name Homology with ArabidopsisSimilar to At1g77765: unknown protein (HF=6e-1) Module size 6 genes NF 0.70 %ile 91.2

Co-expressed genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Contig21078_at

Gene name
Homology with Arabidopsis Similar to At1g77765: unknown protein (HF=6e-1)

Module size 6 genes

NF 0.70

%ile 91.2

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays