Co-expression analysis

Gene ID	Contig21078_at
Gene name
Homology with Arabidopsis	Similar to At1g77765: unknown protein (HF=6e-1)
Module size	6 genes
NF	0.70
%ile	91.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.96	Contig21078_at	Contig21078	-	-	6e-1	At1g77765	unknown protein	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.93	Contig17872_at	Contig17872	-	-	2e+0	At3g24730	catalytic	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.91	Contig4495_x_at	Contig4495	-	-	1e+0	At5g12235	CLE22 (CLAVATA3/ESR-RELATED 22)	O.I.	H.G.	S.X.	Please select
0.63	80.3	0.91	Contig4498_at	Contig4498	-	-	2e-1	At1g28290	AGP31 (arabinogalactan-protein 31)	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.95	Contig4499_s_at	Contig4499	-	-	4e-18	At4g22670	AtHip1 (Arabidopsis thaliana Hsp70-interacting protein 1)	O.I.	H.G.	S.X.	Please select
0.47	62.2	0.91	Contig1403_at	Contig1403	-	-	1e-2	At3g26430	GDSL-motif lipase/hydrolase family protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
20.9	99.7	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
20.4	99.7	GSM215730	Control (DMSO) treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
17.1	99.6	GSM215731	gibberellin treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
16.9	99.6	GSM215727	Control (DMSO) treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
16.8	99.6	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
16.7	99.6	GSM215728	gibberellin treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
13.6	99.5	GSM238427	Endosperm 72 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
8.0	98.7	GSM238422	Endosperm 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.5	98.6	GSM238420	Endosperm 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.4	98.5	GSM238425	Endosperm 48 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

A co-expression module including the maize gene, Zm.12240.1.S1_a_at, orthologous to the query gene, Contig21078_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	69.1	Zm.12240.1.S1_a_at	At1g77765	F-box domain containing protein	-	2e+0	At5g60540	PDX2 (PYRIDOXINE BIOSYNTHESIS 2)	O.I.	H.G.	S.X.	Please select
0.44	55.7	Zm.11909.1.A1_at	At1g77765	-	-	4e+0	At5g42146	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	24.6	Zm.18985.1.A1_at	At1g77765	hypothetical protein LOC100193465	-	1e+0	At2g14692	unknown protein	O.I.	H.G.	S.X.	Please select
0.06	2.3	Zm.19167.2.A1_x_at	At1g77765	Hypothetical protein LOC100194096	-	9e+0	At4g13160	unknown protein	O.I.	H.G.	S.X.	Please select
0.03	1.1	Zm.6480.1.S1_at	At1g77765	hypothetical protein LOC100272627	-	1e-11	At5g64200	ATSC35	O.I.	H.G.	S.X.	Please select
0.03	1.1	Zm.759.1.A1_at	At1g77765	-	-	5e-5	At1g12840	DET3 (DE-ETIOLATED 3)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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