Co-expression analysis

Gene ID	Contig21026_at
Gene name
Homology with Arabidopsis	Similar to At2g30870: GSTF10 (HALIANA GLUTATHIONE S-TRANSFERASE PHI 10) (HF=2e+0)
Module size	6 genes
NF	0.32
%ile	43.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	87.1	0.96	Contig21026_at	Contig21026	-	-	2e+0	At2g30870	GSTF10 (HALIANA GLUTATHIONE S-TRANSFERASE PHI 10)	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.96	Contig10115_at	Contig10115	-	-	7e-1	At5g48220	indole-3-glycerol phosphate synthase, putative	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.97	Contig19027_at	Contig19027	-	-	1e+0	At5g05290	ATEXPA2 (ARABIDOPSIS THALIANA EXPANSIN A2)	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.96	Contig21277_at	Contig21277	-	-	8e-12	At1g26850	dehydration-responsive family protein	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.97	Contig16664_at	Contig16664	-	-	3e-8	At1g73180	eukaryotic translation initiation factor-related	O.I.	H.G.	S.X.	Please select
0.14	12.9	0.96	Contig21045_at	Contig21045	-	-	4e+0	At5g51130	methyltransferase	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.0	97.9	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
2.9	93.4	GSM282026	Malting_day1_Legacy_rep4	GSE11200	Expression data from malting barley seeds
2.7	92.7	GSM161221	cold treatment rep3	GSE6993	Barley low temperature stress
2.7	92.7	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
2.7	92.7	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
2.7	92.7	GSM372944	genotype: Mla6 - pathogen isolates: 5874 - time: 16 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.6	92.3	GSM372945	genotype: Mla6 - pathogen isolates: 5874 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.6	92.3	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
2.5	91.9	GSM372990	genotype: 11542 - pathogen isolates: 5874 - time: 32 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.5	91.9	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment

Inter-species module comparison

A co-expression module including the grape gene, 1616948_at, orthologous to the query gene, Contig21026_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.56	79.4	1616948_at	At2g30870	similar to putative tryptophanyl-tRNA synthetase	-	6e-12	At2g25840	OVA4 (ovule abortion 4)	O.I.	H.G.	S.X.	Please select
0.55	77.3	1607347_at	At2g30870	hypothetical protein LOC100246039	-	9e-12	At1g73530	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.50	72.7	1614151_a_at	At2g30870	-	-	3e-60	At4g17040	ATP-dependent Clp protease proteolytic subunit, putative	O.I.	H.G.	S.X.	Please select
0.44	64.1	1613223_at	At2g30870	hypothetical protein LOC100246849	-	2e-121	At1g02560	CLPP5 (NUCLEAR ENCODED CLP PROTEASE 5)	O.I.	H.G.	S.X.	Please select
0.44	64.1	1618995_at	At2g30870	hypothetical protein LOC100261804	-	2e-6	At4g25370	Clp amino terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.38	53.6	1607811_at	At2g30870	hypothetical protein LOC100251024	-	1e-75	At2g33430	DAL1 (DIFFERENTIATION AND GREENING-LIKE 1)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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