CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig21026_at

Gene name
Homology with Arabidopsis Similar to At2g30870: GSTF10 (HALIANA GLUTATHIONE S-TRANSFERASE PHI 10) (HF=2e+0)

Module size 6 genes

NF 0.32

%ile 43.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.71 87.1 0.96 Contig21026_at Contig21026 - - 2e+0 At2g30870 GSTF10 (HALIANA GLUTATHIONE S-TRANSFERASE PHI 10) O.I. H.G. S.X.
0.67 84.7 0.96 Contig10115_at Contig10115 - - 7e-1 At5g48220 indole-3-glycerol phosphate synthase, putative O.I. H.G. S.X.
0.46 61.0 0.97 Contig19027_at Contig19027 - - 1e+0 At5g05290 ATEXPA2 (ARABIDOPSIS THALIANA EXPANSIN A2) O.I. H.G. S.X.
0.43 56.4 0.96 Contig21277_at Contig21277 - - 8e-12 At1g26850 dehydration-responsive family protein O.I. H.G. S.X.
0.25 28.9 0.97 Contig16664_at Contig16664 - - 3e-8 At1g73180 eukaryotic translation initiation factor-related O.I. H.G. S.X.
0.14 12.9 0.96 Contig21045_at Contig21045 - - 4e+0 At5g51130 methyltransferase O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.0 97.9 GSM282031 Malting_day1_Harrington_rep1 GSE11200 Expression data from malting barley seeds
2.9 93.4 GSM282026 Malting_day1_Legacy_rep4 GSE11200 Expression data from malting barley seeds
2.7 92.7 GSM161221 cold treatment rep3 GSE6993 Barley low temperature stress
2.7 92.7 GSM282033 Malting_day4_Harrington_rep4 GSE11200 Expression data from malting barley seeds
2.7 92.7 GSM431546 pathogen isolates: Mock - rep1 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
2.7 92.7 GSM372944 genotype: Mla6 - pathogen isolates: 5874 - time: 16 - rep1 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.6 92.3 GSM372945 genotype: Mla6 - pathogen isolates: 5874 - time: 16 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.6 92.3 GSM261045 after 3 days in mannitol medium rep1 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
2.5 91.9 GSM372990 genotype: 11542 - pathogen isolates: 5874 - time: 32 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.5 91.9 GSM261022 ABA-Control-rep2 GSE10328 ABA experiment

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.28401.1.S1_at, orthologous to the query gene, Contig21026_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.94 98.9 TaAffx.28401.1.S1_at At2g30870 - - 7e+0 At3g31350 unknown protein O.I. H.G. S.X.
0.31 42.7 TaAffx.31.1.S1_at At2g30870 - - 3e+0 At3g24890 ATVAMP728 O.I. H.G. S.X.
0.31 42.7 Ta.6155.1.S1_at At2g30870 - - 1e-1 At3g08890 unknown protein O.I. H.G. S.X.
0.26 33.6 Ta.22674.1.A1_x_at At2g30870 - - 4e+0 At5g20550 oxidoreductase, 2OG-Fe(II) oxygenase family protein O.I. H.G. S.X.
0.22 27.1 Ta.28932.1.S1_at At2g30870 multidrug resistance associated protein MRP2 - 2e-7 At3g13080 ATMRP3 O.I. H.G. S.X.
0.21 25.5 TaAffx.94232.1.S1_at At2g30870 - - 1e-2 At2g30740 serine/threonine protein kinase, putative O.I. H.G. S.X.
0.19 22.4 TaAffx.12418.1.A1_at At2g30870 - - 5e-12 At5g38240 serine/threonine protein kinase, putative O.I. H.G. S.X.
0.18 21.0 TaAffx.80885.2.A1_at At2g30870 - - 1e-3 At2g01180 ATPAP1 (PHOSPHATIDIC ACID PHOSPHATASE 1) O.I. H.G. S.X.
0.14 15.8 Ta.22674.1.A1_a_at At2g30870 - - 4e+0 At5g20550 oxidoreductase, 2OG-Fe(II) oxygenase family protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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