CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig21026_at

Gene name
Homology with Arabidopsis Similar to At2g30870: GSTF10 (HALIANA GLUTATHIONE S-TRANSFERASE PHI 10) (HF=2e+0)

Module size 6 genes

NF 0.32

%ile 43.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.71 87.1 0.96 Contig21026_at Contig21026 - - 2e+0 At2g30870 GSTF10 (HALIANA GLUTATHIONE S-TRANSFERASE PHI 10) O.I. H.G. S.X.
0.67 84.7 0.96 Contig10115_at Contig10115 - - 7e-1 At5g48220 indole-3-glycerol phosphate synthase, putative O.I. H.G. S.X.
0.46 61.0 0.97 Contig19027_at Contig19027 - - 1e+0 At5g05290 ATEXPA2 (ARABIDOPSIS THALIANA EXPANSIN A2) O.I. H.G. S.X.
0.43 56.4 0.96 Contig21277_at Contig21277 - - 8e-12 At1g26850 dehydration-responsive family protein O.I. H.G. S.X.
0.25 28.9 0.97 Contig16664_at Contig16664 - - 3e-8 At1g73180 eukaryotic translation initiation factor-related O.I. H.G. S.X.
0.14 12.9 0.96 Contig21045_at Contig21045 - - 4e+0 At5g51130 methyltransferase O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.0 97.9 GSM282031 Malting_day1_Harrington_rep1 GSE11200 Expression data from malting barley seeds
2.9 93.4 GSM282026 Malting_day1_Legacy_rep4 GSE11200 Expression data from malting barley seeds
2.7 92.7 GSM161221 cold treatment rep3 GSE6993 Barley low temperature stress
2.7 92.7 GSM282033 Malting_day4_Harrington_rep4 GSE11200 Expression data from malting barley seeds
2.7 92.7 GSM431546 pathogen isolates: Mock - rep1 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
2.7 92.7 GSM372944 genotype: Mla6 - pathogen isolates: 5874 - time: 16 - rep1 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.6 92.3 GSM372945 genotype: Mla6 - pathogen isolates: 5874 - time: 16 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.6 92.3 GSM261045 after 3 days in mannitol medium rep1 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
2.5 91.9 GSM372990 genotype: 11542 - pathogen isolates: 5874 - time: 32 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.5 91.9 GSM261022 ABA-Control-rep2 GSE10328 ABA experiment

Inter-species module comparison

A co-expression module including the rice gene, Os01g0371400, orthologous to the query gene, Contig21026_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 Os01g0371400 At2g30870 - Glutathione S-transferase, C-terminal domaincontaining protein 5e-3 At3g62760 ATGSTF13 O.I. H.G. S.X.
0.63 82.7 Os06g0361200 At2g30870 - - 2e+0 At5g41910 RNA polymerase II mediator complex protein-related O.I. H.G. S.X.
0.57 77.0 Os11g0702800 At2g30870 - - 1e+0 At5g64816 unknown protein O.I. H.G. S.X.
0.50 68.0 Os04g0178500 At2g30870 - - 5e+0 At5g28780 unknown protein O.I. H.G. S.X.
0.50 68.0 Os11g0208600 At2g30870 - Hypothetical protein 4e+0 At2g29420 ATGSTU7 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 7) O.I. H.G. S.X.
0.47 62.3 Os07g0497950 At2g30870 - - 2e+0 At2g16860 GCIP-interacting family protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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