CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig21011_at

Gene name
Homology with Arabidopsis Similar to At4g01915: unknown protein (HF=5e-3)

Module size 37 genes

NF 0.56

%ile 78.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.88 95.2 0.94 Contig21011_at Contig21011 - - 5e-3 At4g01915 unknown protein O.I. H.G. S.X.
0.69 85.5 0.96 HS05N06r_at HS05N06r - - 9e-1 At1g79110 protein binding / zinc ion binding O.I. H.G. S.X.
0.66 81.5 0.95 Contig24952_at Contig24952 - - 3e-1 At4g09450 myb family transcription factor O.I. H.G. S.X.
0.65 81.4 0.95 2623978_R_1403-2212_at 2623978_R_1403-2212 - - 2e+0 At3g16350 myb family transcription factor O.I. H.G. S.X.
0.64 80.9 0.95 HV_CEb0021G08r2_at HV_CEb0021G08r2 - - 2e-2 At4g04510 protein kinase family protein O.I. H.G. S.X.
0.62 79.1 0.95 Contig23664_at Contig23664 - - 1e+0 At3g51080 zinc finger (GATA type) family protein O.I. H.G. S.X.
0.62 79.1 0.95 EBro08_SQ011_O23_at EBro08_SQ011_O23 - - 1e+0 At1g03430 AHP5 (HISTIDINE-CONTAINING PHOSPHOTRANSFER FACTOR 5) O.I. H.G. S.X.
0.61 78.7 0.95 HVSMEf0019H01r2_at HVSMEf0019H01r2 - - 1e+1 At3g27460 unknown protein O.I. H.G. S.X.
0.60 77.3 0.95 Contig26035_at Contig26035 - - 2e+0 At1g10600 - O.I. H.G. S.X.
0.60 77.3 0.95 S0000800072B12F1_at S0000800072B12F1 - - 9e+0 At1g07476 unknown protein O.I. H.G. S.X.
0.58 74.9 0.95 HVSMEm0004M18r2_at HVSMEm0004M18r2 - - 2e+0 At3g09970 calcineurin-like phosphoesterase family protein O.I. H.G. S.X.
0.58 74.9 0.96 HD03N13u_at HD03N13u - - 2e+1 At5g42591 unknown protein O.I. H.G. S.X.
0.57 74.9 0.96 Contig17900_at Contig17900 - - 6e+0 At4g05170 DNA binding / transcription factor O.I. H.G. S.X.
0.57 74.9 0.95 Contig25667_x_at Contig25667 - - 7e-1 At1g24000 Bet v I allergen family protein O.I. H.G. S.X.
0.57 74.9 0.94 HS18M13u_at HS18M13u - - 9e-1 At1g02065 SPL8 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 8) O.I. H.G. S.X.
0.56 74.3 0.95 EBma08_SQ003_L03_at EBma08_SQ003_L03 - - 6e-2 At2g40060 protein binding / structural molecule O.I. H.G. S.X.
0.56 74.3 0.95 EBro08_SQ010_M14_at EBro08_SQ010_M14 - - 1e-9 At3g02190 60S ribosomal protein L39 (RPL39B) O.I. H.G. S.X.
0.55 72.0 0.95 Contig16230_at Contig16230 - - 1e+0 At3g17280 F-box family protein O.I. H.G. S.X.
0.55 72.0 0.96 9507414_R_4264-4644_at 9507414_R_4264-4644 - - 1e+1 At5g06320 NHL3 O.I. H.G. S.X.
0.55 72.0 0.95 HT11A16u_x_at HT11A16u - - 2e+0 At1g64080 unknown protein O.I. H.G. S.X.
0.55 72.0 0.95 EBem06_SQ002_C05_at EBem06_SQ002_C05 - - 4e+0 At5g55131 - O.I. H.G. S.X.
0.53 69.7 0.96 HV_CEa0014H05r2_at HV_CEa0014H05r2 - - 3e+0 At5g64850 unknown protein O.I. H.G. S.X.
0.53 69.7 0.97 EBem04_SQ003_H15_at EBem04_SQ003_H15 - - 3e+0 At5g33806 unknown protein O.I. H.G. S.X.
0.53 69.7 0.94 HM11C20r_at HM11C20r - - 4e+0 At3g55890 yippee family protein O.I. H.G. S.X.
0.52 68.3 0.96 Contig245_s_at Contig245 - - 2e+0 At4g16380 metal ion binding O.I. H.G. S.X.
0.52 68.3 0.95 HU12L19u_at HU12L19u - - 4e+0 At5g46790 unknown protein O.I. H.G. S.X.
0.52 68.3 0.96 EBro02_SQ008_P15_at EBro02_SQ008_P15 - - 1e+1 At5g43211 unknown protein O.I. H.G. S.X.
0.52 68.3 0.96 Contig12986_at Contig12986 - - 7e-13 At3g28007 nodulin MtN3 family protein O.I. H.G. S.X.
0.51 67.5 0.96 EBro08_SQ001_H04_at EBro08_SQ001_H04 - - 1e+1 At5g23027 unknown protein O.I. H.G. S.X.
0.51 67.5 0.95 HY02C19u_at HY02C19u - - 5e+0 At4g15610 integral membrane family protein O.I. H.G. S.X.
0.50 66.9 0.95 Contig23458_at Contig23458 - - 5e+0 At5g48950 thioesterase family protein O.I. H.G. S.X.
0.49 63.7 0.96 Contig10097_at Contig10097 - - 4e-1 At3g16450 jacalin lectin family protein O.I. H.G. S.X.
0.48 63.2 0.94 Contig23296_at Contig23296 - - 1e-17 At1g02190 CER1 protein, putative O.I. H.G. S.X.
0.48 63.2 0.94 EBca01_SQ004_P03_x_at EBca01_SQ004_P03 - - 2e+0 At1g06960 small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putative O.I. H.G. S.X.
0.47 62.2 0.95 EBro08_SQ007_C12_at EBro08_SQ007_C12 - - 9e-1 At5g61270 PIF7 (PHYTOCHROME-INTERACTING FACTOR7) O.I. H.G. S.X.
0.46 61.0 0.96 HW03P01u_at HW03P01u - - 1e+1 At5g13190 - O.I. H.G. S.X.
0.44 58.9 0.96 V00087.1_at V00087.1 - - 3e-1 At5g43525 - O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.88	95.2	0.94	Contig21011_at	Contig21011	-	-	5e-3	At4g01915	unknown protein	O.I.	H.G.	S.X.
0.69	85.5	0.96	HS05N06r_at	HS05N06r	-	-	9e-1	At1g79110	protein binding / zinc ion binding	O.I.	H.G.	S.X.
0.66	81.5	0.95	Contig24952_at	Contig24952	-	-	3e-1	At4g09450	myb family transcription factor	O.I.	H.G.	S.X.
0.65	81.4	0.95	2623978_R_1403-2212_at	2623978_R_1403-2212	-	-	2e+0	At3g16350	myb family transcription factor	O.I.	H.G.	S.X.
0.64	80.9	0.95	HV_CEb0021G08r2_at	HV_CEb0021G08r2	-	-	2e-2	At4g04510	protein kinase family protein	O.I.	H.G.	S.X.
0.62	79.1	0.95	Contig23664_at	Contig23664	-	-	1e+0	At3g51080	zinc finger (GATA type) family protein	O.I.	H.G.	S.X.
0.62	79.1	0.95	EBro08_SQ011_O23_at	EBro08_SQ011_O23	-	-	1e+0	At1g03430	AHP5 (HISTIDINE-CONTAINING PHOSPHOTRANSFER FACTOR 5)	O.I.	H.G.	S.X.
0.61	78.7	0.95	HVSMEf0019H01r2_at	HVSMEf0019H01r2	-	-	1e+1	At3g27460	unknown protein	O.I.	H.G.	S.X.
0.60	77.3	0.95	Contig26035_at	Contig26035	-	-	2e+0	At1g10600	-	O.I.	H.G.	S.X.
0.60	77.3	0.95	S0000800072B12F1_at	S0000800072B12F1	-	-	9e+0	At1g07476	unknown protein	O.I.	H.G.	S.X.
0.58	74.9	0.95	HVSMEm0004M18r2_at	HVSMEm0004M18r2	-	-	2e+0	At3g09970	calcineurin-like phosphoesterase family protein	O.I.	H.G.	S.X.
0.58	74.9	0.96	HD03N13u_at	HD03N13u	-	-	2e+1	At5g42591	unknown protein	O.I.	H.G.	S.X.
0.57	74.9	0.96	Contig17900_at	Contig17900	-	-	6e+0	At4g05170	DNA binding / transcription factor	O.I.	H.G.	S.X.
0.57	74.9	0.95	Contig25667_x_at	Contig25667	-	-	7e-1	At1g24000	Bet v I allergen family protein	O.I.	H.G.	S.X.
0.57	74.9	0.94	HS18M13u_at	HS18M13u	-	-	9e-1	At1g02065	SPL8 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 8)	O.I.	H.G.	S.X.
0.56	74.3	0.95	EBma08_SQ003_L03_at	EBma08_SQ003_L03	-	-	6e-2	At2g40060	protein binding / structural molecule	O.I.	H.G.	S.X.
0.56	74.3	0.95	EBro08_SQ010_M14_at	EBro08_SQ010_M14	-	-	1e-9	At3g02190	60S ribosomal protein L39 (RPL39B)	O.I.	H.G.	S.X.
0.55	72.0	0.95	Contig16230_at	Contig16230	-	-	1e+0	At3g17280	F-box family protein	O.I.	H.G.	S.X.
0.55	72.0	0.96	9507414_R_4264-4644_at	9507414_R_4264-4644	-	-	1e+1	At5g06320	NHL3	O.I.	H.G.	S.X.
0.55	72.0	0.95	HT11A16u_x_at	HT11A16u	-	-	2e+0	At1g64080	unknown protein	O.I.	H.G.	S.X.
0.55	72.0	0.95	EBem06_SQ002_C05_at	EBem06_SQ002_C05	-	-	4e+0	At5g55131	-	O.I.	H.G.	S.X.
0.53	69.7	0.96	HV_CEa0014H05r2_at	HV_CEa0014H05r2	-	-	3e+0	At5g64850	unknown protein	O.I.	H.G.	S.X.
0.53	69.7	0.97	EBem04_SQ003_H15_at	EBem04_SQ003_H15	-	-	3e+0	At5g33806	unknown protein	O.I.	H.G.	S.X.
0.53	69.7	0.94	HM11C20r_at	HM11C20r	-	-	4e+0	At3g55890	yippee family protein	O.I.	H.G.	S.X.
0.52	68.3	0.96	Contig245_s_at	Contig245	-	-	2e+0	At4g16380	metal ion binding	O.I.	H.G.	S.X.
0.52	68.3	0.95	HU12L19u_at	HU12L19u	-	-	4e+0	At5g46790	unknown protein	O.I.	H.G.	S.X.
0.52	68.3	0.96	EBro02_SQ008_P15_at	EBro02_SQ008_P15	-	-	1e+1	At5g43211	unknown protein	O.I.	H.G.	S.X.
0.52	68.3	0.96	Contig12986_at	Contig12986	-	-	7e-13	At3g28007	nodulin MtN3 family protein	O.I.	H.G.	S.X.
0.51	67.5	0.96	EBro08_SQ001_H04_at	EBro08_SQ001_H04	-	-	1e+1	At5g23027	unknown protein	O.I.	H.G.	S.X.
0.51	67.5	0.95	HY02C19u_at	HY02C19u	-	-	5e+0	At4g15610	integral membrane family protein	O.I.	H.G.	S.X.
0.50	66.9	0.95	Contig23458_at	Contig23458	-	-	5e+0	At5g48950	thioesterase family protein	O.I.	H.G.	S.X.
0.49	63.7	0.96	Contig10097_at	Contig10097	-	-	4e-1	At3g16450	jacalin lectin family protein	O.I.	H.G.	S.X.
0.48	63.2	0.94	Contig23296_at	Contig23296	-	-	1e-17	At1g02190	CER1 protein, putative	O.I.	H.G.	S.X.
0.48	63.2	0.94	EBca01_SQ004_P03_x_at	EBca01_SQ004_P03	-	-	2e+0	At1g06960	small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putative	O.I.	H.G.	S.X.
0.47	62.2	0.95	EBro08_SQ007_C12_at	EBro08_SQ007_C12	-	-	9e-1	At5g61270	PIF7 (PHYTOCHROME-INTERACTING FACTOR7)	O.I.	H.G.	S.X.
0.46	61.0	0.96	HW03P01u_at	HW03P01u	-	-	1e+1	At5g13190	-	O.I.	H.G.	S.X.
0.44	58.9	0.96	V00087.1_at	V00087.1	-	-	3e-1	At5g43525	-	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.5 96.7 GSM282031 Malting_day1_Harrington_rep1 GSE11200 Expression data from malting barley seeds
3.9 95.8 GSM282036 Malting_steeped_Morex_rep2 GSE11200 Expression data from malting barley seeds
3.8 95.7 GSM238435 Embryo 24 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
3.5 95.1 GSM238427 Endosperm 72 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
3.5 95.1 GSM282033 Malting_day4_Harrington_rep4 GSE11200 Expression data from malting barley seeds
3.5 95.1 GSM261047 after 3 days in mannitol medium rep3 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.5 95.1 GSM382232 Root_Hg1 GSE15295 Mercury toxicity in barley roots
3.3 94.6 GSM238428 Embryo 16DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
3.2 94.3 GSM261045 after 3 days in mannitol medium rep1 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.0 93.8 GSM382234 Root_Hg3 GSE15295 Mercury toxicity in barley roots

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
4.5	96.7	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
3.9	95.8	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds
3.8	95.7	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.5	95.1	GSM238427	Endosperm 72 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.5	95.1	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
3.5	95.1	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.5	95.1	GSM382232	Root_Hg1	GSE15295	Mercury toxicity in barley roots
3.3	94.6	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.2	94.3	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.0	93.8	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage

Gene ID	Contig21011_at
Gene name
Homology with Arabidopsis	Similar to At4g01915: unknown protein (HF=5e-3)
Module size	37 genes
NF	0.56
%ile	78.2

Co-expression analysis

Gene ID Contig21011_at Gene name Homology with ArabidopsisSimilar to At4g01915: unknown protein (HF=5e-3) Module size 37 genes NF 0.56 %ile 78.2

Co-expressed genes

Click More genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Contig21011_at

Gene name
Homology with Arabidopsis Similar to At4g01915: unknown protein (HF=5e-3)

Module size 37 genes

NF 0.56

%ile 78.2

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays