Co-expression analysis

Gene ID Contig21011_at
Gene name
Homology with ArabidopsisSimilar to At4g01915: unknown protein (HF=5e-3)
Module size 37 genes
NF 0.56
%ile 78.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8895.20.94Contig21011_atContig21011--5e-3At4g01915unknown proteinO.I.H.G.S.X.
0.6985.50.96HS05N06r_atHS05N06r--9e-1At1g79110protein binding / zinc ion bindingO.I.H.G.S.X.
0.6681.50.95Contig24952_atContig24952--3e-1At4g09450myb family transcription factorO.I.H.G.S.X.
0.6581.40.952623978_R_1403-2212_at2623978_R_1403-2212--2e+0At3g16350myb family transcription factorO.I.H.G.S.X.
0.6480.90.95HV_CEb0021G08r2_atHV_CEb0021G08r2--2e-2At4g04510protein kinase family proteinO.I.H.G.S.X.
0.6279.10.95Contig23664_atContig23664--1e+0At3g51080zinc finger (GATA type) family proteinO.I.H.G.S.X.
0.6279.10.95EBro08_SQ011_O23_atEBro08_SQ011_O23--1e+0At1g03430AHP5 (HISTIDINE-CONTAINING PHOSPHOTRANSFER FACTOR 5)O.I.H.G.S.X.
0.6178.70.95HVSMEf0019H01r2_atHVSMEf0019H01r2--1e+1At3g27460unknown proteinO.I.H.G.S.X.
0.6077.30.95Contig26035_atContig26035--2e+0At1g10600-O.I.H.G.S.X.
0.6077.30.95S0000800072B12F1_atS0000800072B12F1--9e+0At1g07476unknown proteinO.I.H.G.S.X.
0.5874.90.95HVSMEm0004M18r2_atHVSMEm0004M18r2--2e+0At3g09970calcineurin-like phosphoesterase family proteinO.I.H.G.S.X.
0.5874.90.96HD03N13u_atHD03N13u--2e+1At5g42591unknown proteinO.I.H.G.S.X.
0.5774.90.96Contig17900_atContig17900--6e+0At4g05170DNA binding / transcription factorO.I.H.G.S.X.
0.5774.90.95Contig25667_x_atContig25667--7e-1At1g24000Bet v I allergen family proteinO.I.H.G.S.X.
0.5774.90.94HS18M13u_atHS18M13u--9e-1At1g02065SPL8 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 8)O.I.H.G.S.X.
0.5674.30.95EBma08_SQ003_L03_atEBma08_SQ003_L03--6e-2At2g40060protein binding / structural moleculeO.I.H.G.S.X.
0.5674.30.95EBro08_SQ010_M14_atEBro08_SQ010_M14--1e-9At3g0219060S ribosomal protein L39 (RPL39B)O.I.H.G.S.X.
0.5572.00.95Contig16230_atContig16230--1e+0At3g17280F-box family proteinO.I.H.G.S.X.
0.5572.00.969507414_R_4264-4644_at9507414_R_4264-4644--1e+1At5g06320NHL3O.I.H.G.S.X.
0.5572.00.95HT11A16u_x_atHT11A16u--2e+0At1g64080unknown proteinO.I.H.G.S.X.
0.5572.00.95EBem06_SQ002_C05_atEBem06_SQ002_C05--4e+0At5g55131-O.I.H.G.S.X.
0.5369.70.96HV_CEa0014H05r2_atHV_CEa0014H05r2--3e+0At5g64850unknown proteinO.I.H.G.S.X.
0.5369.70.97EBem04_SQ003_H15_atEBem04_SQ003_H15--3e+0At5g33806unknown proteinO.I.H.G.S.X.
0.5369.70.94HM11C20r_atHM11C20r--4e+0At3g55890yippee family proteinO.I.H.G.S.X.
0.5268.30.96Contig245_s_atContig245--2e+0At4g16380metal ion bindingO.I.H.G.S.X.
0.5268.30.95HU12L19u_atHU12L19u--4e+0At5g46790unknown proteinO.I.H.G.S.X.
0.5268.30.96EBro02_SQ008_P15_atEBro02_SQ008_P15--1e+1At5g43211unknown proteinO.I.H.G.S.X.
0.5268.30.96Contig12986_atContig12986--7e-13At3g28007nodulin MtN3 family proteinO.I.H.G.S.X.
0.5167.50.96EBro08_SQ001_H04_atEBro08_SQ001_H04--1e+1At5g23027unknown proteinO.I.H.G.S.X.
0.5167.50.95HY02C19u_atHY02C19u--5e+0At4g15610integral membrane family proteinO.I.H.G.S.X.
0.5066.90.95Contig23458_atContig23458--5e+0At5g48950thioesterase family proteinO.I.H.G.S.X.
0.4963.70.96Contig10097_atContig10097--4e-1At3g16450jacalin lectin family proteinO.I.H.G.S.X.
0.4863.20.94Contig23296_atContig23296--1e-17At1g02190CER1 protein, putativeO.I.H.G.S.X.
0.4863.20.94EBca01_SQ004_P03_x_atEBca01_SQ004_P03--2e+0At1g06960small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putativeO.I.H.G.S.X.
0.4762.20.95EBro08_SQ007_C12_atEBro08_SQ007_C12--9e-1At5g61270PIF7 (PHYTOCHROME-INTERACTING FACTOR7)O.I.H.G.S.X.
0.4661.00.96HW03P01u_atHW03P01u--1e+1At5g13190-O.I.H.G.S.X.
0.4458.90.96V00087.1_atV00087.1--3e-1At5g43525-O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.596.7GSM282031Malting_day1_Harrington_rep1GSE11200Expression data from malting barley seedsLink to GEO
3.995.8GSM282036Malting_steeped_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
3.895.7GSM238435Embryo 24 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.595.1GSM238427Endosperm 72 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.595.1GSM282033Malting_day4_Harrington_rep4GSE11200Expression data from malting barley seedsLink to GEO
3.595.1GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.595.1GSM382232Root_Hg1GSE15295Mercury toxicity in barley rootsLink to GEO
3.394.6GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.294.3GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.093.8GSM382234Root_Hg3GSE15295Mercury toxicity in barley rootsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage