Co-expression analysis

Gene ID Contig21004_at
Gene name
Homology with ArabidopsisSimilar to At5g19030: RNA recognition motif (RRM)-containing protein (HF=2e+1)
Module size 6 genes
NF 0.52
%ile 72.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4053.10.96Contig21004_atContig21004--2e+1At5g19030RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.6784.70.96Contig7966_atContig7966--4e+0At2g42830SHP2 (SHATTERPROOF 2)O.I.H.G.S.X.
0.6077.30.96Contig7904_atContig7904--2e-4At5g01220SQD2 (sulfoquinovosyldiacylglycerol 2)O.I.H.G.S.X.
0.5066.90.97Contig8129_atContig8129--5e-1At1g23145RALFL2 (RALF-LIKE 2)O.I.H.G.S.X.
0.4053.10.96Contig15889_atContig15889--2e+0At4g29590methyltransferaseO.I.H.G.S.X.
0.3342.60.96Contig16123_atContig16123--2e-1At5g07130LAC13 (laccase 13)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.494.8GSM161200cold treatment rep1GSE6993Barley low temperature stressLink to GEO
3.494.8GSM261076Albina e-16 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.194.1GSM161221cold treatment rep3GSE6993Barley low temperature stressLink to GEO
2.993.4GSM16082238% SWC rep3GSE6990Barley drought stressLink to GEO
2.993.4GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.893.1GSM261040Dicktoo-deacclimation-rep2GSE10329Low temperature stress in cv. DicktooLink to GEO
2.893.1GSM261032Dicktoo control-rep3GSE10329Low temperature stress in cv. DicktooLink to GEO
2.792.7GSM261041Dicktoo-deacclimation-rep3GSE10329Low temperature stress in cv. DicktooLink to GEO
2.792.7GSM261030Dicktoo-control-rep1GSE10329Low temperature stress in cv. DicktooLink to GEO
2.792.7GSM215731gibberellin treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage