Co-expression analysis

Gene ID	Contig20987_at
Gene name
Homology with Arabidopsis	Similar to At4g02610: tryptophan synthase, alpha subunit, putative (HF=1e-3)
Module size	6 genes
NF	0.49
%ile	69.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	84.7	0.82	Contig20987_at	Contig20987	-	-	1e-3	At4g02610	tryptophan synthase, alpha subunit, putative	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.86	EBem09_SQ004_B23_s_at	EBem09_SQ004_B23	-	-	2e+0	At4g15750	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.89	Contig568_s_at	Contig568	GRP94 homologue	-	4e-2	At1g06240	unknown protein	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.87	Contig4283_at	Contig4283	-	-	9e-1	At2g40510	40S ribosomal protein S26 (RPS26A)	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.88	Contig19275_at	Contig19275	-	-	9e-5	At3g13850	LBD22 (LOB DOMAIN-CONTAINING PROTEIN 22)	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.83	HC112E03_T3_s_at	HC112E03_T3	ABA-responsive protein	-	1e-3	At5g23360	GRAM domain-containing protein / ABA-responsive protein-related	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
19.6	99.7	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
10.5	99.2	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
9.4	99.0	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.9	98.3	GSM372983	genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
6.7	98.3	GSM261067	Xantha s-46 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.6	98.2	GSM373009	genotype: 11542 - pathogen isolates: K1 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
6.6	98.2	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.5	98.2	GSM261072	Albina f-17 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.5	98.2	GSM261061	Xantha b-12 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.0	97.9	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

Inter-species module comparison

A co-expression module including the maize gene, Zm.10818.1.S1_at, orthologous to the query gene, Contig20987_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	Zm.10818.1.S1_at	At4g02610	hypothetical protein LOC100273163	-	1e-4	At4g02610	tryptophan synthase, alpha subunit, putative	O.I.	H.G.	S.X.	Please select
0.31	31.6	Zm.13026.1.S1_at	At4g02610	-	-	3e-1	At4g28930	unknown protein	O.I.	H.G.	S.X.	Please select
0.09	4.0	Zm.9039.1.A1_at	At4g02610	hypothetical protein LOC100193374	-	5e-1	At1g55310	SR33	O.I.	H.G.	S.X.	Please select
0.06	2.3	Zm.5358.1.A1_at	At4g02610	ras-related protein Rab11D	-	9e-1	At2g01250	60S ribosomal protein L7 (RPL7B)	O.I.	H.G.	S.X.	Please select
0.06	2.3	Zm.8194.1.A1_at	At4g02610	hypothetical protein LOC100274820 /// hypothetical protein LOC100276986	-	7e+0	At5g04750	F1F0-ATPase inhibitor protein, putative	O.I.	H.G.	S.X.	Please select
0.01	0.3	Zm.9846.1.A1_at	At4g02610	-	-	8e-2	At1g04445	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage