Co-expression analysis

Gene ID Contig20987_at
Gene name
Homology with ArabidopsisSimilar to At4g02610: tryptophan synthase, alpha subunit, putative (HF=1e-3)
Module size 6 genes
NF 0.49
%ile 69.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6784.70.82Contig20987_atContig20987--1e-3At4g02610tryptophan synthase, alpha subunit, putativeO.I.H.G.S.X.
0.6077.30.86EBem09_SQ004_B23_s_atEBem09_SQ004_B23--2e+0At4g15750invertase/pectin methylesterase inhibitor family proteinO.I.H.G.S.X.
0.6077.30.89Contig568_s_atContig568GRP94 homologue-4e-2At1g06240unknown proteinO.I.H.G.S.X.
0.5572.00.87Contig4283_atContig4283--9e-1At2g4051040S ribosomal protein S26 (RPS26A)O.I.H.G.S.X.
0.4458.90.88Contig19275_atContig19275--9e-5At3g13850LBD22 (LOB DOMAIN-CONTAINING PROTEIN 22)O.I.H.G.S.X.
0.2630.40.83HC112E03_T3_s_atHC112E03_T3ABA-responsive protein-1e-3At5g23360GRAM domain-containing protein / ABA-responsive protein-relatedO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
19.699.7GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
10.599.2GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
9.499.0GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
6.998.3GSM372983genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep1GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
6.798.3GSM261067Xantha s-46 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
6.698.2GSM373009genotype: 11542 - pathogen isolates: K1 - time: 32 - rep3GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
6.698.2GSM261073Albina f-17 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
6.598.2GSM261072Albina f-17 Hardened rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
6.598.2GSM261061Xantha b-12 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
6.097.9GSM261079Albina e-16 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO

Inter-species module comparison

A co-expression module including the grape gene, 1622254_at, orthologous to the query gene, Contig20987_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9198.81622254_atAt4g02610--2e-1At2g33793unknown proteinO.I.H.G.S.X.
0.4464.11610985_atAt4g02610--4e+0At2g13510unknown proteinO.I.H.G.S.X.
0.077.81612201_atAt4g02610hypothetical protein LOC100266189-7e-5At4g32551LUG (LEUNIG)O.I.H.G.S.X.
0.066.81611094_s_atAt4g02610hypothetical protein LOC100253655-2e-11At3g56460oxidoreductase, zinc-binding dehydrogenase family proteinO.I.H.G.S.X.
0.056.01614850_atAt4g02610--1e-10At5g66290unknown proteinO.I.H.G.S.X.
0.045.21614588_s_atAt4g02610hypothetical protein LOC100253521-8e-2At3g12100cation efflux family protein / metal tolerance protein, putativeO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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